Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003384 (rfaP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003384 showshow history
Names
rfaP ECDH10B_3812
Product
kinase that phosphorylates core heptose of lipopolysaccharide
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3900753 3901550 798 266
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010440 (IPR010440 (DEPRECATED) Lipopolysaccharide kinase) Jul 2009
Automated Process Approved IPR017172 (IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP) Jul 2009
Automated Process Approved IPR011009 (IPR011009 Protein kinase-like domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfaP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011866
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3812 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product kinase that phosphorylates core heptose of lipopolysaccharide Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010440 (DEPRECATED) Lipopolysaccharide kinase Protein Sequence Similarity - InterPro Domain: IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011009 Protein kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011009
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP Protein Sequence Similarity - InterPro Domain: IPR017172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011866 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011866
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003006 rfaP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003187 rfaP CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001540 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004670 rfaP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003767 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007439 rfaP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003684 rfaP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005410 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010696 rfaP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008105 rfaP pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080631 rfaP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008926 rfaP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007441 rfaP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004122 rfaP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008563 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005554 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008331 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006845 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006396 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006860 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009834 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005113 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007647 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005432 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005498 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005340 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005226 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005825 rfaP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028699 waaP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005323 rfaP_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008527 rfaP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011866 waaP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003734 rfaP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003982 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003962 rfaP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134579 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002880 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004182 rfaP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008105 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004111 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004259 rfaP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008354 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011659 rfaP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011326 rfaP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005141 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008404 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005753 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006050 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006956 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007501 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008356 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006490 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003609 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003572 waaP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004637 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008526 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004465 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007988 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004795 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113542 waaP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085523 waaP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101505 rfaP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005487 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004915 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008402 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003963 rfaP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009475 rfaP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003207 rfaP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004576 waaP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075376 waaP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089889 waaP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004147 waaP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004117 waaP CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3895753 to 3906550
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003378rfaZCDScomplement38949453895796Downstream
AEC-0003379rfaYCDScomplement38958673896565Downstream
AEC-0003380rfaJCDScomplement38965833897599Downstream
AEC-0003381rfaICDScomplement38976393898658Downstream
AEC-0003382rfaBCDScomplement38986583899737Downstream
AEC-0003383rfaSCDScomplement38997813900716Downstream
AEC-0003384rfaPCDScomplement39007533901550Matches
AEC-0003385rfaGCDScomplement39015433902667Overlaps Upstream
AEC-0003386rfaQCDScomplement39026643903698Upstream
AEC-0003387kdtACDSforward39041403905417Upstream
AEC-0003388coaDCDSforward39054253905904Upstream
AEC-0003389mutMCDScomplement39059433906752Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948