Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003405 (gltS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003405 showshow history
Names
gltS ECDH10B_3835
Product
glutamate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3923067 3924272 1206 402
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004445 (IPR004445 Sodium/glutamate symport carrier protein GltS) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015501 glutamate:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gltS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011941
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3835 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004445 Sodium/glutamate symport carrier protein GltS Protein Sequence Similarity - InterPro Domain: IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011941 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011941
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015501 glutamate:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002134 gltS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002290 gltS CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001497 gltS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004645 gltS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003790 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007413 gltS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003704 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005386 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009907 gltS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008130 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080655 gltS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008951 gltS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007467 gltS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004163 gltS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008588 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005580 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008356 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006871 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006421 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006834 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009860 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005088 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007673 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005458 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005524 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005389 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006385 gltS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005851 gltS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028725 gltS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005299 gltS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008551 gltS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011941 gltS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003711 gltS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004008 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003985 gltS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134603 gltS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002929 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004207 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008130 gltS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004080 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004285 gltS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008378 gltS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011739 gltS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011247 gltS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005117 gltS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008430 gltS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005779 gltS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006025 gltS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007610 gltS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007527 gltS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008381 gltS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006463 gltS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003633 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003596 gltS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004665 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008552 gltS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004439 gltS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008021 gltS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004828 gltS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113486 gltS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085499 gltS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101574 gltS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005460 gltS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004887 gltS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006544 gltS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004063 gltS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009522 gltS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003232 gltS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004601 gltS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075350 gltS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089915 gltS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004121 gltS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004091 gltS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003612 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000138 gltC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003725 gltC_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003425 gltS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001772 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234323 gltS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004144 gltS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004182 gltS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007811 gltS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003253 gltS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115446 gltS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007945 gltS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006286 gltS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002654 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005509 gltS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007943 gltS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029692 gltS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005104 gltS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004582 gltS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004647 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008400 gltS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003963 gltS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000039 gltS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000036 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004960 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3918067 to 3929272
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000072spoTCDSforward39180013920115Downstream
AEC-0003403spoUCDSforward39201223920811Downstream
AEC-0003404recGCDSforward39208173922898Downstream
AEC-0003405gltSCDScomplement39230673924272Matches
AEC-0003406yicECDSforward39245523925943Upstream
AEC-0003407yicHCDSforward39260643927773Upstream
AEC-0003408yicICDScomplement39278263930144Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948