Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003430 (yidK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003430 showshow history
Names
yidK ECDH10B_3862
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3954008 3955723 1716 572
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yidK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012026
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3862 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012026 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012026
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003994 yidK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004208 yidK CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004590 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003923 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003738 yidK CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007695 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005923 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080786 yidK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007583 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007498 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004243 yidK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008618 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005667 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008441 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006955 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006503 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006751 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009945 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005005 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007757 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005543 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005611 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005475 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006469 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005950 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028813 yidK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005244 yidK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012026 yidK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003684 yidK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004037 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004041 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134698 yidK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003019 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004242 yidK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004027 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003270 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075249 yidK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090000 yidK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004069 yidK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3949008 to 3960723
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003424emrDCDSforward39495293950713Downstream
AEC-0003425yidFCDScomplement39507213951218Downstream
AEC-0003426yidGCDScomplement39512153951577Downstream
AEC-0003427yidHCDScomplement39515673951914Downstream
AEC-0003428yidICDSforward39520223952471Downstream
AEC-0003429yidJCDScomplement39525183954011Overlaps Downstream
AEC-0003430yidKCDScomplement39540083955723Matches
AEC-0003431yidLCDSforward39558903956783Upstream
AEC-0004097glvG_2CDSpcomplement39567803956956Upstream
AEC-0004519glvGpseudogenecomplement39567803957594Upstream
AEC-0003432glvG_1CDSpcomplement39569563957594Upstream
AEC-0003433glvC_2CDSpcomplement39575943958079Upstream
AEC-0004520glvCpseudogenecomplement39575943959210Upstream
AEC-0003434glvC_1CDSpcomplement39581043959210Upstream
AEC-0003435yidPCDSforward39595063960222Upstream
AEC-0003436yidECDScomplement39602193961880Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948