Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003441 (dgoT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003441 showshow history
Names
dgoT ECDH10B_3877
Product
D-galactonate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3966045 3967337 1293 431
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR000849 (IPR000849 Sugar phosphate transporter) Jul 2009
Automated Process Approved IPR004744 (IPR004744 (DEPRECATED) D-galactonate transporter) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dgoT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012072
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3877 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-galactonate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000849 Sugar phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004744 (DEPRECATED) D-galactonate transporter Protein Sequence Similarity - InterPro Domain: IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012072 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012072
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003393 dgoT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003026 dgoT CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004578 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003931 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007368 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003746 dgoT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005329 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007684 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005909 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080796 dgoT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007596 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007509 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004251 dgoT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008631 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005235 dgoT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008589 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012072 dgoT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003671 dgoT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004049 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004251 dgoT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064753 dgoT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002620 dgoT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000797 dgoT CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004378 dgoT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008463 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012000 dgoT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011016 dgoT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005032 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008518 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005868 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008466 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006386 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003714 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003676 dgoT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004783 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004349 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101823 dgoT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005376 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004798 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006634 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075261 dgoT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256139 dgoT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004058 dgoT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003973 dgoT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002079 exuT_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3961045 to 3972337
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003436yidECDScomplement39602193961880Downstream
AEC-0003437ibpBCDScomplement39620763962504Downstream
AEC-0003438ibpACDScomplement39626163963029Downstream
AEC-0003439yidQCDSforward39633353963667Downstream
AEC-0003440yidRCDScomplement39636693964883Downstream
AEC-0003441dgoTCDScomplement39660453967337Matches
AEC-0004031dgoDCDScomplement39674573968605Upstream
AEC-0004032dgoACDScomplement39686023969219Upstream
AEC-0003442dgoKCDScomplement39692033970081Upstream
AEC-0004033dgoRCDScomplement39700783970767Upstream
AEC-0003443yidXCDSforward39710453971701Upstream
AEC-0003444yidACDScomplement39717473972559Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948