Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003453 (tnaA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003453 showshow history
Names
tnaA ECDH10B_3895
Product
tryptophanase/L-cysteine desulfhydrase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3984337 3985752 1416 472
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011166 (IPR011166 Beta-eliminating lyase family) Jul 2009
Automated Process Approved IPR013440 (IPR013440 Tryptophanase) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR001597 (IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009072 aromatic amino acid family metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011166
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011166
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009034 tryptophanase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tnaA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012133
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3895 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tryptophanase/L-cysteine desulfhydrase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013440 Tryptophanase Protein Sequence Similarity - InterPro Domain: IPR013440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011166 Beta-eliminating lyase family Protein Sequence Similarity - InterPro Domain: IPR011166
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase Protein Sequence Similarity - InterPro Domain: IPR001597
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012133 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012133
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009072 aromatic amino acid family metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011166
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009034 tryptophanase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013440
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011166
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001597
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003540 tnaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003119 tnaA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016682 tnaA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001599 tnaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004562 tnaA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003947 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007351 tnaA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003761 tnaA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010527 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007668 tnaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005891 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080816 tnaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007612 tnaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007525 tnaA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004270 tnaA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008648 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005698 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008468 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006983 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006531 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006723 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009973 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004977 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007785 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005570 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005638 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005502 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006497 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006854 tnaA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028841 tnaA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005219 tnaA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008608 tnaA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012133 tnaA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003652 tnaA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004066 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004072 tnaA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134723 tnaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003047 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004270 tnaA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009630 tnaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003304 tnaA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075282 tnaA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089973 tnaA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004043 tnaA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001998 tnaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000215 tnaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002626 tnaA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3979337 to 3990752
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003448rpmHCDSforward39799433980083Upstream
AEC-0003449rnpACDSforward39801003980459Upstream
AEC-0004098yidDCDSforward39804233980680Upstream
AEC-0003450yidCCDSforward39806833982329Upstream
AEC-0003451trmECDSforward39824353983799Upstream
AEC-0003452tnaCCDSforward39840423984116Upstream
AEC-0003453tnaACDSforward39843373985752Matches
AEC-0003454tnaBCDSforward39858433987090Downstream
AEC-0003455mdtLCDSforward39872223988397Downstream
AEC-0003456yidZCDSforward39883723989331Downstream
AEC-0003457yieECDSforward39894883990237Downstream
AEC-0003458yieFCDSforward39902593990825Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948