Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003454 (tnaB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003454 showshow history
Names
tnaB ECDH10B_3896
Product
tryptophan transporter of low affinity
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3985843 3987090 1248 416
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002091 (IPR002091 (DEPRECATED) Aromatic amino acid permease) Jul 2009
Automated Process Approved IPR013061 (IPR013061 Tryptophan/tryrosine permease, conserved site) Jul 2009
Automated Process Approved IPR013059 (IPR013059 Tryptophan/tyrosine transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tnaB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012135
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3896 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product tryptophan transporter of low affinity Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR013061 Tryptophan/tryrosine permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR013061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR013059 Tryptophan/tyrosine transporter Protein Sequence Similarity - InterPro Domain: IPR013059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR002091 (DEPRECATED) Aromatic amino acid permease Protein Sequence Similarity - InterPro Domain: IPR002091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012135 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012135
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003763 tnaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004251 tnaB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001600 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004561 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003948 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007350 tnaB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003762 tnaB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010526 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007667 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005890 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080817 tnaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007613 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007526 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004271 tnaB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008649 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005699 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008469 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006984 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006532 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006722 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009974 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004976 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007786 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005571 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005639 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005503 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006498 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006855 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028842 tnaB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005218 tnaB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008609 tnaB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012135 tnaB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003651 tnaB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004067 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134724 tnaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003048 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004271 tnaB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003999 tnaB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009629 tnaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003305 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004735 tnaB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075283 tnaB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089972 tnaB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004042 tnaB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3980843 to 3992090
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003450yidCCDSforward39806833982329Upstream
AEC-0003451trmECDSforward39824353983799Upstream
AEC-0003452tnaCCDSforward39840423984116Upstream
AEC-0003453tnaACDSforward39843373985752Upstream
AEC-0003454tnaBCDSforward39858433987090Matches
AEC-0003455mdtLCDSforward39872223988397Downstream
AEC-0003456yidZCDSforward39883723989331Downstream
AEC-0003457yieECDSforward39894883990237Downstream
AEC-0003458yieFCDSforward39902593990825Downstream
AEC-0003459yieGCDScomplement39908793992216Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948