Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003467 (bglF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003467 showshow history
Names
bglF ECDH10B_3909
Product
fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3999327 4001204 1878 626
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001127 (IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1) Jul 2009
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Jul 2009
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Jul 2009
Automated Process Approved IPR011297 (IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component) Jul 2009
Automated Process Approved IPR011535 (IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component) Jul 2009
Automated Process Approved IPR004719 (IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component) Jul 2009
Automated Process Approved IPR011055 (IPR011055 Duplicated hybrid motif) Jul 2009
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bglF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012171
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3909 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component Protein Sequence Similarity - InterPro Domain: IPR011535
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component Protein Sequence Similarity - InterPro Domain: IPR011297
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Protein Sequence Similarity - InterPro Domain: IPR004719
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011055 Duplicated hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Protein Sequence Similarity - InterPro Domain: IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012171 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012171
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003399 bglF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002468 bglF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020336 bglF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004547 bglF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003960 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007335 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003775 bglF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010511 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007654 bglF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005877 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080829 bglF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007634 bglF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007540 bglF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004283 bglF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008662 bglF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005205 bglF_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008622 bglF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012171 bglF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003633 bglF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004080 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004282 bglF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062129 arbF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001014 arbF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000480 arbF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000975 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075306 bglF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089955 bglF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004020 bglF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004262 bglF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001738 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006171 arbF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000738 arbF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001088 arbF_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001131 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3994327 to 4006204
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003463yieKCDScomplement39942783995000Downstream
AEC-0003464yieLCDScomplement39950153996211Downstream
AEC-0003465bglHCDScomplement39962113997827Downstream
AEC-0003466bglBCDScomplement39978963999308Downstream
AEC-0003467bglFCDScomplement39993274001204Matches
AEC-0003468bglGCDScomplement40013384002174Upstream
AEC-0003469phoUCDScomplement40024604003185Upstream
AEC-0003470pstBCDScomplement40032004003973Upstream
AEC-0003471pstACDScomplement40041564005046Upstream
AEC-0003472pstCCDScomplement40050464006005Upstream
AEC-0003473pstSCDScomplement40060924007132Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948