Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003472 (pstC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003472 showshow history
Names
pstC ECDH10B_3914
Product
phosphate transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4005046 4006005 960 320
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Automated Process Approved IPR011864 (IPR011864 Phosphate ABC transporter, permease protein PstC) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pstC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012186
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3914 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011864 Phosphate ABC transporter, permease protein PstC Protein Sequence Similarity - InterPro Domain: IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012186 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012186
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001575 pstC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001310 pstC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016277 pstC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003573 pstC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001612 pstC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004541 pstC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003965 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007326 pstC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003780 pstC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010506 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007648 pstC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005871 PstC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080837 pstC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007640 pstC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007545 pstC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004288 pstC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008669 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005712 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008485 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007000 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006548 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006706 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009990 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004959 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007803 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005588 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005655 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005520 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006515 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006870 pstC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028857 pstC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005199 pstC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008628 pstC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012186 pstC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003628 pstC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004085 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004088 pstC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134741 pstC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003063 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004288 pstC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064813 pstC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002680 pstC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003323 pstC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001401 pstC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008248 pstC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003977 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004410 pstC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008489 pstC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012096 pstC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010923 pstC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008545 pstC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005907 pstC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007637 pstC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008492 pstC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006355 pstC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003735 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003696 pstC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004815 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008665 pstC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008133 pstC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113273 pstC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085393 pstC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101899 pstC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005306 pstC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003987 pstC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009617 pstC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003318 pstC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004537 pstC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075312 pstC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089950 pstC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004015 pstC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004257 pstC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001591 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012115 phoW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002436 pstC_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002257 pstC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001918 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243960 pstC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008323 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004961 pstC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007182 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003301 pstC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129196 pstC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005745 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006347 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003886 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009413 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006627 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033931 pstC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008912 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004758 pstC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004708 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007903 pstC2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008209 pstC2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004082 pstC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004980 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005017 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4000046 to 4011005
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003467bglFCDScomplement39993274001204Downstream
AEC-0003468bglGCDScomplement40013384002174Downstream
AEC-0003469phoUCDScomplement40024604003185Downstream
AEC-0003470pstBCDScomplement40032004003973Downstream
AEC-0003471pstACDScomplement40041564005046Overlaps Downstream
AEC-0003472pstCCDScomplement40050464006005Matches
AEC-0003473pstSCDScomplement40060924007132Upstream
AEC-0003474glmUCDScomplement40094374010807Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948