Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003473 (pstS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003473 showshow history
Names
pstS ECDH10B_3915
Product
phosphate transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4006092 4007132 1041 347
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005673 (IPR005673 Phosphate ABC transporter, substrate-binding protein PstS) Jul 2009
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015114 phosphate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pstS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012190
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3915 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005673 Phosphate ABC transporter, substrate-binding protein PstS Protein Sequence Similarity - InterPro Domain: IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012190 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012190
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015114 phosphate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001627 pstS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001325 pstS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016278 pstS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003574 pstS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001613 pstS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004540 pstS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003966 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007325 pstS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003781 pstS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010504 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007647 pstS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005870 PstS CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080838 pstS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007641 pstS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007546 pstS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004289 pstS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008670 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005713 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008486 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007001 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006549 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006705 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009991 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004958 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007804 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005589 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005656 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005521 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006516 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006871 pstS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028858 pstS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005198 pstS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008629 pstS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012190 pstS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003627 pstS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004086 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004089 pstS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134742 pstS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003064 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004289 pstS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064814 pstS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002681 pstS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002303 pstS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001402 pstS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008249 pstS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003974 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004411 pstS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008490 pstS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012100 pstS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010919 pstS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008546 pstS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005906 pstS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007638 pstS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008493 pstS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006354 pstS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003736 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003697 pstS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004817 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008666 pstS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008134 pstS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113271 pstS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085392 pstS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101903 pstS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005305 pstS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009334 pstS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003986 pstS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009616 pstS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003319 pstS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004536 pstS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075314 pstS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089949 pstS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004014 pstS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004256 pstS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001592 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012119 phoS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002437 phoS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002256 pstS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001919 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243967 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008324 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004962 pstS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007181 pstS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003300 pstS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129205 pstS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005744 pstS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006346 pstS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003885 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009412 pstS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006626 pstS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033932 pstS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008911 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004759 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004706 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007904 pstS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008210 pstS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004083 pstS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004978 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005015 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4001092 to 4012132
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003467bglFCDScomplement39993274001204Downstream
AEC-0003468bglGCDScomplement40013384002174Downstream
AEC-0003469phoUCDScomplement40024604003185Downstream
AEC-0003470pstBCDScomplement40032004003973Downstream
AEC-0003471pstACDScomplement40041564005046Downstream
AEC-0003472pstCCDScomplement40050464006005Downstream
AEC-0003473pstSCDScomplement40060924007132Matches
AEC-0003474glmUCDScomplement40094374010807Upstream
AEC-0003475atpCCDScomplement40111604011579Upstream
AEC-0003476atpDCDScomplement40116004012982Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948