Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003481 (atpE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003481 showshow history
Names
atpE ECDH10B_3924
Product
F0 sector of membrane-bound ATP synthase, subunit c
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4016557 4016796 240 80
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000454 (IPR000454 ATP synthase, F0 complex, subunit C) Jul 2009
Automated Process Approved IPR005953 (IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast) Jul 2009
Automated Process Approved IPR002379 (IPR002379 V-ATPase proteolipid subunit C-like domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015986 ATP synthesis coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name atpE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012220
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3924 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product F0 sector of membrane-bound ATP synthase, subunit c Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000454 ATP synthase, F0 complex, subunit C Protein Sequence Similarity - InterPro Domain: IPR000454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002379 V-ATPase proteolipid subunit C-like domain Protein Sequence Similarity - InterPro Domain: IPR002379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast Protein Sequence Similarity - InterPro Domain: IPR005953
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012220 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012220
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015986 ATP synthesis coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000454
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000552 atpE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000665 atpE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014792 atpE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003589 atpE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001628 atpE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004531 atpE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003975 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007316 atpE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005388 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010494 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007638 atpE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005857 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080850 atpE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007654 atpE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007555 atpE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004298 atpE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008684 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005731 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008502 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007016 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006565 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006689 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010007 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004941 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007819 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005605 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005672 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005537 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006532 atpE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006886 atpE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028875 atpE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005189 atpE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008639 atpE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012220 atpE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003618 atpE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004099 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004102 atpE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134757 atpE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003082 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004301 atpE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064854 atpE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002656 atpE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002308 atpE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001442 atpE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008262 atpE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003964 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004424 atpE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008505 atpE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012156 atpE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010865 atpE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007680 atpE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008559 atpE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005893 atpE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007651 atpE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008506 atpE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006341 atpE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003747 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003708 atpE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004830 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008679 atpE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008148 atpE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113220 atpE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085375 atpE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101948 atpE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005292 atpE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008917 atpE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004091 atpE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009600 atpE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003109 atpE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004524 atpE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075210 atpE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090033 atpE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003996 atpE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004229 atpE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001602 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012164 atpE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002446 atpE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002239 atpE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001928 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243980 atpE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008334 atpE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004972 atpE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007171 atpE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003291 atpE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129245 atpE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005734 atpE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006336 atpE CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009402 atpE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006616 atpE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033941 atpE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008900 atpE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004769 atpE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004696 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007914 atpE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008220 atpE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004092 atpE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004966 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005004 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4011557 to 4021796
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003475atpCCDScomplement40111604011579Downstream
AEC-0003476atpDCDScomplement40116004012982Downstream
AEC-0003477atpGCDScomplement40130094013872Downstream
AEC-0003478atpACDScomplement40139234015464Downstream
AEC-0003479atpHCDScomplement40154774016010Downstream
AEC-0003480atpFCDScomplement40160254016495Downstream
AEC-0003481atpECDScomplement40165574016796Matches
AEC-0003482atpBCDScomplement40168434017658Upstream
AEC-0003483atpICDScomplement40176674018047Upstream
AEC-0003484gidBCDScomplement40186644019287Upstream
AEC-0003485gidACDScomplement40193514021240Upstream
AEC-0003486mioCCDScomplement40216194022062Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948