Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003488 (asnA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003488 showshow history
Names
asnA ECDH10B_3932
Product
asparagine synthetase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4022762 4023754 993 331
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004618 (IPR004618 Aspartate--ammonia ligase) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006529 asparagine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004071 aspartate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name asnA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012242
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3932 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product asparagine synthetase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004618 Aspartate--ammonia ligase Protein Sequence Similarity - InterPro Domain: IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012242 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012242
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006529 asparagine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004071 aspartate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002148 asnA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002169 asnA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001621 asnA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004524 asnA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003982 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007309 asnA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003795 asnA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010487 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007631 asnA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009728 AsnA pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080857 asnA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007562 asnA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004306 asnA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008691 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005738 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008510 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007023 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007214 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010534 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010014 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010460 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007826 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005612 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010612 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008679 asnA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006893 asnA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028883 asnA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005182 asnA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008646 asnA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012242 asnA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003610 asnA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004106 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004109 asnA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134764 asnA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003090 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004308 asnA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060202 asnA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002673 asnA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000001 asnA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001450 asnA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008271 asnA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003955 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004432 asnA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008514 asnA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012180 asnA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007672 asnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008568 asnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008760 asnA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005884 asnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008624 asnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007660 asnA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008515 asnA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006332 asnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003754 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003715 asnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004840 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008688 asnA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009007 asnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008157 asnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008784 asnA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113206 asnA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085368 asnA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101974 asnA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005283 asnA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009270 asnA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008926 asnA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004084 asnA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009593 asnA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003102 asnA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004517 asnA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075202 asnA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090040 asnA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004003 asnA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004222 asnA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001609 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000008 asnA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002453 asnA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002232 asnA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001935 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234223 asnA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004104 asnA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000004 asnA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007164 asnA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003284 asnA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115313 asnA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005726 asnA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006327 asnA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001655 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009394 asnA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006608 asnA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029580 asnA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008893 asnA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000004 asnA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004689 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007922 asnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003927 asnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000004 asnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004959 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004997 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4017762 to 4028754
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003483atpICDScomplement40176674018047Upstream
AEC-0003484gidBCDScomplement40186644019287Upstream
AEC-0003485gidACDScomplement40193514021240Upstream
AEC-0003486mioCCDScomplement40216194022062Upstream
AEC-0003487asnCCDScomplement40221524022610Upstream
AEC-0003488asnACDSforward40227624023754Matches
AEC-0003489viaACDScomplement40237594025210Downstream
AEC-0003490trkDCDSforward40269234028791Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948