Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003490 (trkD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003490 showshow history
Names
trkD ECDH10B_3935
Product
potassium transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4026923 4028791 1869 623
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003855 (IPR003855 Potassium transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trkD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012251
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3935 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product potassium transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003855 Potassium transporter Protein Sequence Similarity - InterPro Domain: IPR003855
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012251 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012251
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000427 kup CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000594 kup CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014803 trkD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001618 kup CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004521 kup CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003985 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007299 kup CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003798 trkD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010483 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007628 kup CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009731 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080860 trkD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010408 kup CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007565 kup CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004309 kup CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008694 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005741 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008513 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007026 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007217 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010531 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010017 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010457 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007829 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005615 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007456 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010615 kup CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008682 kup CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006896 kup CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028886 trkD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005179 kup CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008649 kup CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012251 kup CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003607 trkD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004109 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004112 kup CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134767 trkD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003093 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004311 kup CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060205 trkD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002672 kup CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000002 kup CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001453 trkD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008274 kup CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003952 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004435 trkD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008517 kup CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012185 kup CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010838 kup CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007669 kup CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008571 kup CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008763 kup CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008627 kup CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007663 kup CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008518 kup CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006329 kup CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003757 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003718 trkD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004843 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008691 kup CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009004 kup CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008160 kup CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008787 kup CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113203 trkD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085365 trkD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101983 trkD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005280 kup CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009273 kup CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008929 kup CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004103 kup CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009589 kup CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003083 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004514 kup CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075197 kup CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090044 kup CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003985 kup CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004268 trkD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001613 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000016 kup CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002457 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002228 trkD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001939 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234229 trkD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004107 kup CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000010 trkD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007161 kup CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003282 kup CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115316 trkD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005723 kup CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006321 kup CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001652 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009391 kup CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006605 kup CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029583 trkD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008890 kup CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000007 trkD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004686 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007928 kup CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003930 kup CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000007 trkD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004955 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004993 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4021923 to 4033791
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003486mioCCDScomplement40216194022062Upstream
AEC-0003487asnCCDScomplement40221524022610Upstream
AEC-0003488asnACDSforward40227624023754Upstream
AEC-0003489viaACDScomplement40237594025210Upstream
AEC-0003490trkDCDSforward40269234028791Matches
AEC-0003491rbsDCDSforward40289584029377Downstream
AEC-0003492rbsACDSforward40293854030890Downstream
AEC-0003493rbsCCDSforward40308954031860Downstream
AEC-0003494rbsBCDSforward40318854032775Downstream
AEC-0003495rbsKCDSforward40329014033830Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948