Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003491 (rbsD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003491 showshow history
Names
rbsD ECDH10B_3936
Product
predicted cytoplasmic sugar-binding protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4028958 4029377 420 140
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007721 (IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007721
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rbsD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012256
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3936 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted cytoplasmic sugar-binding protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU Protein Sequence Similarity - InterPro Domain: IPR007721
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012256 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012256
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007721
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000961 rbsD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001201 rbsD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018135 rbsD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000014 rbsD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001636 rbsD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004520 rbsD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003986 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007298 rbsD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003799 rbsD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010482 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007627 rbsD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009732 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080861 rbsD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010409 rbsD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007566 rbsD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004310 rbsD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008695 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005742 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008514 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007027 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007218 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010530 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010018 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010456 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007830 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005616 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007457 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010616 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008683 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006897 rbsD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028887 rbsD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005178 rbsD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008650 rbsD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012256 rbsD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003606 rbsD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004110 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004113 rbsD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134768 rbsD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003094 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004312 rbsD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060209 rbsD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002667 rbsD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000004 rbsD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001457 rbsD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008275 rbsD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003950 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004436 rbsD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008518 rbsD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012189 rbsD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010836 rbsD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007668 rbsD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008572 rbsD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008764 rbsD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005880 rbsD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008628 rbsD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007664 rbsD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008519 rbsD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006328 rbsD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003758 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003719 rbsD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004844 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008692 rbsD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009003 rbsD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008161 rbsD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008788 rbsD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113202 rbsD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085364 rbsD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101989 rbsD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005279 rbsD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009274 rbsD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008930 rbsD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004104 rbsD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009588 rbsD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075196 rbsD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090045 rbsD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003984 rbsD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004269 rbsD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001614 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000019 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002458 rbsD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002227 rbsD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001940 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234243 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004108 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000011 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007160 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003281 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115329 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005722 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006320 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001651 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009390 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006604 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029584 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008889 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000008 rbsD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004685 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007929 rbsD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003931 rbsD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000008 rbsD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004954 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004992 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4023958 to 4034377
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003489viaACDScomplement40237594025210Upstream
AEC-0003490trkDCDSforward40269234028791Upstream
AEC-0003491rbsDCDSforward40289584029377Matches
AEC-0003492rbsACDSforward40293854030890Downstream
AEC-0003493rbsCCDSforward40308954031860Downstream
AEC-0003494rbsBCDSforward40318854032775Downstream
AEC-0003495rbsKCDSforward40329014033830Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948