Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003512 (gpp) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003512 showshow history
Names
gpp ECDH10B_3968
Product
guanosine pentaphosphatase/exopolyphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4059688 4061172 1485 495
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003695 (IPR003695 Ppx/GppA phosphatase) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gpp Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012347
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3968 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product guanosine pentaphosphatase/exopolyphosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003695 Ppx/GppA phosphatase Protein Sequence Similarity - InterPro Domain: IPR003695
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012347 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012347
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001779 gpp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001570 gpp CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014965 gppA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000214 gppA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001669 gppA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007928 gppA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007270 gppA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003820 gppA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010451 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009578 gppA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006191 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080890 gpp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009738 gppA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010098 gppA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004337 gpp CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008722 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002590 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008541 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007054 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007245 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009839 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010045 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008280 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007857 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005643 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007484 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009700 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008710 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006924 gppA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028915 gpp CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008681 gppA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012347 gpp CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003575 gpp CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004139 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004139 gppA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134796 gpp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004748 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004342 gppA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064545 gppA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002485 gppA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004289 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003454 gppA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008306 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003921 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004475 gppA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008546 gppA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012277 gppA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010758 gppA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007640 gppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008600 gppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008539 gppA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007508 gppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008480 gppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007694 gppA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008547 gppA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008876 gppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003792 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003752 gppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004879 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008721 gppA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008384 gppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008192 gppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007586 gppA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112700 gppA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085105 gppA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102073 gppA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005251 gppA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009100 gppA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008652 gppA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004132 gppA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009560 gppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007468 gppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004480 gppA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075164 gppA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090066 gppA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003956 gppA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004304 gpp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001953 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000523 gppA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003542 gppA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003077 gppA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003312 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241853 gppA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004613 gppA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000190 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001815 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000123 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004182 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004108 gppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000178 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000208 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004792 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4054688 to 4066172
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003506ilvYCDScomplement40538704054763Downstream
AEC-0003507ilvCCDSforward40549134056388Downstream
AEC-0003508ppiCCDScomplement40564754056756Downstream
AEC-0003509yifN_2CDSpcomplement40569554057230Downstream
AEC-0004521yifNpseudogenecomplement40569554057403Downstream
AEC-0003510yifN_1CDSpcomplement40571854057403Downstream
AEC-0003511repCDSforward40576204059641Downstream
AEC-0003512gppCDScomplement40596884061172Matches
AEC-0003513rhlBCDScomplement40613084062573Upstream
AEC-0003514trxACDSforward40627044063033Upstream
AEC-0003515rhoLCDSforward40631744063275Upstream
AEC-0003516rhoCDSforward40633604064619Upstream
AEC-0003517rfeCDSforward40648594065962Upstream
AEC-0003518wzzECDSforward40659744067020Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948