Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003514 (trxA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003514 showshow history
Names
trxA ECDH10B_3970
Product
thioredoxin 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4062704 4063033 330 110
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Jul 2009
Automated Process Approved IPR005746 (IPR005746 Thioredoxin) Jul 2009
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Jul 2009
Automated Process Approved IPR013766 (IPR013766 Thioredoxin domain) Jul 2009
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Jul 2009
Automated Process Approved IPR015467 (IPR015467 (DEPRECATED) Thioredoxin, core) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trxA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012357
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3970 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thioredoxin 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005746 Thioredoxin Protein Sequence Similarity - InterPro Domain: IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013766 Thioredoxin domain Protein Sequence Similarity - InterPro Domain: IPR013766
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015467 (DEPRECATED) Thioredoxin, core Protein Sequence Similarity - InterPro Domain: IPR015467
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012357 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012357
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000150 trxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000220 trxA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014967 trxA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000216 trxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001671 trx CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007926 trx CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004015 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007268 trx CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005390 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010449 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009576 trx CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006193 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080892 trxA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009740 trx CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010100 trx CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004339 trxA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008725 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002592 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008543 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007056 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007247 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009841 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010047 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008278 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007859 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005645 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007486 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009698 trx CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008712 trx CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006926 trx CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028917 trxA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008683 trx CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012357 trxA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003573 trxA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004141 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004141 trx CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134798 trxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004750 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004344 trxA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064543 trxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002494 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001147 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003452 trxA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008308 trx CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003919 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004477 trxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008548 trx CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012286 trxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010750 trxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007638 trx CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008602 trx CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008541 trx CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007510 trx CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008482 trx CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007696 trx CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008549 trx CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008874 trx CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003795 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003754 trxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004881 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008723 trx CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008382 trx CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008194 trx CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007588 trx CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112692 trxA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085103 trxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102078 trxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005249 trx CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009102 trx CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008654 trx CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004134 trxA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009558 trx CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007466 trx CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004478 trxA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075161 trxA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090068 trxA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003954 trxA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004306 trxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001951 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000529 fipA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003540 fipA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003079 trxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003314 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241855 trxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004615 trx CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000193 trxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007668 trx CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003512 trxA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128344 trxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006003 trx CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006452 trx CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009086 trx CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007217 trx CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029961 trxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006899 trx CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000126 trxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004180 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008329 trx CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004110 trx CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000180 trxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000210 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004790 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4057704 to 4068033
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003511repCDSforward40576204059641Upstream
AEC-0003512gppCDScomplement40596884061172Upstream
AEC-0003513rhlBCDScomplement40613084062573Upstream
AEC-0003514trxACDSforward40627044063033Matches
AEC-0003515rhoLCDSforward40631744063275Downstream
AEC-0003516rhoCDSforward40633604064619Downstream
AEC-0003517rfeCDSforward40648594065962Downstream
AEC-0003518wzzECDSforward40659744067020Downstream
AEC-0003519rffECDSforward40670764068206Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948