Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003518 (wzzE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003518 showshow history
Names
wzzE ECDH10B_3974
Product
Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4065974 4067020 1047 349
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003856 (IPR003856 Polysaccharide chain length determinant N-terminal domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wzzE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012370
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3974 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator Experimental - PubMed ID: 10515954
Reference: Escherichia coli K-12 AB1133
Mar 2007
Protein Family
Automated Process Approved protein family IPR003856 Polysaccharide chain length determinant N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR003856
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012370 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012370
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001452 wzzE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001364 wzzE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014972 wzzE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000219 wzzE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001675 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007921 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004018 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007264 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003825 wzzE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010445 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009572 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006197 WzzE pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080897 wzzE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009744 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010104 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004344 wzzE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008729 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002597 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008547 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007060 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007251 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009845 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010051 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008274 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007863 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005649 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007490 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009694 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008716 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006930 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028922 wzzE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009752 wzzE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008688 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012370 wzzE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003569 wzzE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004146 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004145 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134802 wzzE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004755 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004350 wzzE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064540 wzzE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002503 wzzE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001145 wzzE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003448 wzzE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008311 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003916 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004480 wzzE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008551 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012299 wzzE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010737 wzzE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007635 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008605 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008544 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007513 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008485 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007699 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008552 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008871 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003798 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003757 wzzE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008726 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008379 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008197 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007591 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112687 wzzE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085100 wzzE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102084 wzzE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005245 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009105 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008657 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004139 wzzE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009554 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007463 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004473 wzzE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075157 wzzE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090073 wzzE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003950 wzzE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004311 wzzE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001948 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000539 b3785 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003537 wzzE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003082 wzzE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003317 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241869 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004618 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000196 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007665 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003515 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128325 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006006 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006455 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002151 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009083 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007220 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029964 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006902 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000129 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004177 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008326 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004114 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000183 wzzE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000213 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004787 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4060974 to 4072020
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003512gppCDScomplement40596884061172Upstream
AEC-0003513rhlBCDScomplement40613084062573Upstream
AEC-0003514trxACDSforward40627044063033Upstream
AEC-0003515rhoLCDSforward40631744063275Upstream
AEC-0003516rhoCDSforward40633604064619Upstream
AEC-0003517rfeCDSforward40648594065962Upstream
AEC-0003518wzzECDSforward40659744067020Matches
AEC-0003519rffECDSforward40670764068206Downstream
AEC-0003520rffDCDSforward40682034069465Downstream
AEC-0003521rffGCDSforward40694654070532Downstream
AEC-0003522rffHCDSforward40705514071432Downstream
AEC-0003523rffCCDSforward40714104072084Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948