Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003520 (rffD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003520 showshow history
Names
rffD ECDH10B_3976
Product
UDP-N-acetyl-D-mannosamine dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4068203 4069465 1263 421
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017476 (IPR017476 UDP-glucose/GDP-mannose dehydrogenase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR014027 (IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal) Jul 2009
Automated Process Approved IPR001732 (IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal) Jul 2009
Automated Process Approved IPR014026 (IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation) Jul 2009
Automated Process Approved IPR014028 (IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3976 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetyl-D-mannosamine dehydrogenase Published Annotation - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR014027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR014028
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Protein Sequence Similarity - InterPro Domain: IPR014026
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001732
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017476 UDP-glucose/GDP-mannose dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017476
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012374 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001184 rffD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001122 rffD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014974 rffD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000221 wecC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001678 wecC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007919 wecC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004020 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007262 wecC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003827 rffD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010442 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009570 wecC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006199 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080899 rffD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009746 wecC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010106 wecC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004346 rffD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008731 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002599 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008549 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007062 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007253 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009847 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010053 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008272 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007865 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005651 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007492 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009692 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008718 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006932 wecC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028924 rffD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009754 wecC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008690 wecC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012374 wecC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003567 rffD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004148 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004147 wecC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134804 rffD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004757 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004352 rffD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064538 rffD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002497 wecC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001144 wecC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003445 rffD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008313 wecC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003914 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004482 rffD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008553 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012304 wecC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010730 wecC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007633 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008607 wecC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008546 wecC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007515 wecC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008487 wecC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007701 wecC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008554 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008869 wecC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003800 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003759 rffD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004886 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008728 wecC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008377 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008199 wecC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007593 wecC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112684 rffD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085098 rffD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102088 rffD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005243 wecC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009107 wecC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008659 wecC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004141 rffD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009552 wecC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007461 wecC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004471 rffD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075155 rffD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090075 rffD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003948 wecC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004313 rffD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001946 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000544 b3787 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003535 wecC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003084 rffD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003319 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241874 rffD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004620 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000198 rffD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007663 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003517 rffD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128321 rffD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006008 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006457 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002153 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009081 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007222 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029966 rffD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006904 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000131 rffD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004174 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008324 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004116 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000185 rffD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000215 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004784 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4063203 to 4074465
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003515rhoLCDSforward40631744063275Upstream
AEC-0003516rhoCDSforward40633604064619Upstream
AEC-0003517rfeCDSforward40648594065962Upstream
AEC-0003518wzzECDSforward40659744067020Upstream
AEC-0003519rffECDSforward40670764068206Overlaps Upstream
AEC-0003520rffDCDSforward40682034069465Matches
AEC-0003521rffGCDSforward40694654070532Overlaps Downstream
AEC-0003522rffHCDSforward40705514071432Downstream
AEC-0003523rffCCDSforward40714104072084Downstream
AEC-0003524rffACDSforward40720894073219Downstream
AEC-0003525wzxECDSforward40732214074471Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948