Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003521 (rffG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003521 showshow history
Names
rffG ECDH10B_3977
Product
dTDP-D-glucose 4,6-dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4069465 4070532 1068 356
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005888 (IPR005888 dTDP-glucose 4,6-dehydratase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012376
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3977 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dTDP-D-glucose 4,6-dehydratase Experimental - PubMed ID: 11380254
Reference: Escherichia coli K-12 W3110 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005888 dTDP-glucose 4,6-dehydratase Protein Sequence Similarity - InterPro Domain: IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012376 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012376
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000051 rffG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000051 rffG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020463 rffG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001679 rfbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007918 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004021 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007261 rfbB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003828 rffG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010441 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009569 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006200 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080900 rffG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009747 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010107 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004347 rffG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008732 rfbB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002600 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008550 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007063 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007254 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009848 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010054 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008271 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007866 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005652 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007493 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009691 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008719 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006933 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028925 rffG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009755 rffG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008691 rfbB2 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012376 rffG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003566 rffG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004149 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004148 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134805 rffG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004758 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004353 rffG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064537 rffG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002496 rffG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001143 rffG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003444 rffG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008314 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003913 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004483 rffG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008554 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012309 rffG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010728 rffG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007632 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008608 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008547 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007516 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008488 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007702 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008555 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008868 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003801 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003760 rffG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004887 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008729 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008376 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008200 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007594 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112682 rffG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085097 rffG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102091 rffG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005242 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009108 rfbB2 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008660 rfbB2 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004142 rffG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007460 rfbB2 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075154 rffG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090076 rffG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003947 rffG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004314 rffG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001945 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000549 rffG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003534 rffG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003085 rffG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003320 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241875 rffG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004621 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000200 rffG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007662 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003518 rffG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128319 rffG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006009 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006458 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002154 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009080 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007223 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029967 rffG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006905 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000133 rffG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004173 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008323 rfbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004117 rfbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000186 rffG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000217 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004783 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4064465 to 4075532
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003516rhoCDSforward40633604064619Upstream
AEC-0003517rfeCDSforward40648594065962Upstream
AEC-0003518wzzECDSforward40659744067020Upstream
AEC-0003519rffECDSforward40670764068206Upstream
AEC-0003520rffDCDSforward40682034069465Overlaps Upstream
AEC-0003521rffGCDSforward40694654070532Matches
AEC-0003522rffHCDSforward40705514071432Downstream
AEC-0003523rffCCDSforward40714104072084Downstream
AEC-0003524rffACDSforward40720894073219Downstream
AEC-0003525wzxECDSforward40732214074471Downstream
AEC-0004040rffTCDSforward40744684075547Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948