Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003522 (rffH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003522 showshow history
Names
rffH ECDH10B_3978
Product
glucose-1-phosphate thymidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4070551 4071432 882 294
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005907 (IPR005907 Glucose-1-phosphate thymidylyltransferase, short form) Jul 2009
Automated Process Approved IPR005835 (IPR005835 Nucleotidyl transferase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012379
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3978 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucose-1-phosphate thymidylyltransferase Experimental - PubMed ID: 7559340
Reference: Escherichia coli K-12 W3110 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005907 Glucose-1-phosphate thymidylyltransferase, short form Protein Sequence Similarity - InterPro Domain: IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005835 Nucleotidyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012379 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012379
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000065 rfbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000064 rfbA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020462 rffH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000223 rmlA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001680 rfbA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007917 rfbA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004022 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007260 rfbA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003829 rffH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010440 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009568 rfbA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006201 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080901 rffH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009748 rfbA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010108 rfbA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004348 rffH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008733 rfbA2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002601 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008551 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007064 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007255 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009849 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010055 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008270 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007867 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005653 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007494 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009690 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008720 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006934 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028926 rffH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009756 rffH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008692 rfbA1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012379 rffH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003565 rffH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004150 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004149 rfbA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134806 rffH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004759 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004354 rffH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061698 rfbA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003684 rfbA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004174 rfbA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003912 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004484 rffH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008867 rfbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003802 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003761 rffH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004888 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008201 rfbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007595 rfbA1 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112680 rffH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085096 rffH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005241 rfbA1 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004143 rffH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009550 rfbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007459 rfbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004469 rffH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075153 rffH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090077 rffH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003946 rffH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004315 rffH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001944 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000551 rffH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003533 rffH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003086 rffH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003321 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241876 rffH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004622 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000201 rffH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007661 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004494 rffH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128317 rffH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006010 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006459 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002155 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009079 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007224 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029968 rffH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006906 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000134 rffH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004172 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008322 rfbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004118 rfbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000187 rffH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000218 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004782 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4065551 to 4076432
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003517rfeCDSforward40648594065962Upstream
AEC-0003518wzzECDSforward40659744067020Upstream
AEC-0003519rffECDSforward40670764068206Upstream
AEC-0003520rffDCDSforward40682034069465Upstream
AEC-0003521rffGCDSforward40694654070532Upstream
AEC-0003522rffHCDSforward40705514071432Matches
AEC-0003523rffCCDSforward40714104072084Overlaps Downstream
AEC-0003524rffACDSforward40720894073219Downstream
AEC-0003525wzxECDSforward40732214074471Downstream
AEC-0004040rffTCDSforward40744684075547Downstream
AEC-0003526wzyECDSforward40755444076896Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948