Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003524 (rffA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003524 showshow history
Names
rffA ECDH10B_3980
Product
dTDP-4-keto-6-deoxy-D-glucose aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4072089 4073219 1131 377
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000653 (IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase) Jul 2009
Automated Process Approved IPR012749 (IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012384
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3980 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dTDP-4-keto-6-deoxy-D-glucose aminotransferase Experimental - PubMed ID: 15271350
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like Protein Sequence Similarity - InterPro Domain: IPR012749
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012384 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012384
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001075 rffA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001010 rffA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014976 rffA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000225 wecE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001682 wecE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007915 wecE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004024 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007258 wecE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003831 rffA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010438 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009566 wecE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006203 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080903 rffA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009750 wecE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010110 wecE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004350 rffA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008735 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002603 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008553 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007066 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007257 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009851 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010057 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008268 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007869 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005655 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007496 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009688 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008722 wecE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006936 wecE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028928 rffA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009758 wecE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008694 wecE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012384 wecE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003563 rffA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004152 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004151 wecE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134808 rffA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004761 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004356 rffA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064535 rffA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002498 rffA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001141 rffA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003442 rffA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008317 wecE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003910 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004486 rffA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008557 wecE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012315 wecE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010722 wecE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007629 wecE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008611 wecE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008550 wecE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007519 wecE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008491 wecE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007705 wecE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008558 wecE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008865 wecE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003804 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003763 rffA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004890 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008732 wecE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008373 wecE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008203 wecE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007597 wecE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112676 rffA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085094 rffA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102100 rffA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005239 wecE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009111 wecE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008663 wecE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004145 rffA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009548 wecE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007457 wecE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004467 rffA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075151 rffA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090079 rffA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003944 wecE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004317 rffA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001942 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000555 b3791 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003531 arnB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003088 rffA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003323 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241879 rffA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004624 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000203 rffA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007659 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003520 rffA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128313 rffA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006012 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006461 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009077 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007226 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029970 rffA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006908 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000136 rffA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004170 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008320 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004120 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000189 rffA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000220 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004780 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4067089 to 4078219
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003519rffECDSforward40670764068206Upstream
AEC-0003520rffDCDSforward40682034069465Upstream
AEC-0003521rffGCDSforward40694654070532Upstream
AEC-0003522rffHCDSforward40705514071432Upstream
AEC-0003523rffCCDSforward40714104072084Upstream
AEC-0003524rffACDSforward40720894073219Matches
AEC-0003525wzxECDSforward40732214074471Downstream
AEC-0004040rffTCDSforward40744684075547Downstream
AEC-0003526wzyECDSforward40755444076896Downstream
AEC-0003527rffMCDSforward40768994077639Downstream
AEC-0003528yifKCDSforward40778304079215Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948