Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003526 (wzyE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003526 showshow history
Names
wzyE ECDH10B_3983
Product
Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4075544 4076896 1353 451
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010691 (IPR010691 Probable ECA polymerase WzyE) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010691
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wzyE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012392
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3983 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase Published Annotation - PubMed ID: 16199561
Reference: Escherichia coli K-12 AB1133
Mar 2007
Protein Family
Automated Process Approved protein family IPR010691 Probable ECA polymerase WzyE Protein Sequence Similarity - InterPro Domain: IPR010691
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012392 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012392
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010691
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001377 wzyE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001369 wzyE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014979 wzyE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000228 wzyE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001685 wzyE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007912 wzyE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004027 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007255 wzyE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003834 wecF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010435 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009563 wzyE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006206 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080907 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009753 wzyE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010113 wzyE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004353 wzyE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008739 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002606 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008556 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007069 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007260 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009854 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010060 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008265 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007872 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005658 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007499 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009685 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006939 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028931 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009761 wzyE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008697 wzyE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012392 wzyE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003560 wzyE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004155 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004154 wzyE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134811 wzyE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004764 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004360 wzyE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064532 wzyE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002997 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003208 wzyE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003439 wzyE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008320 wzyE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003907 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004489 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008560 wzyE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012323 wecF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010713 wecF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007626 wzyE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008614 wzyE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008553 wzyE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007522 wzyE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008494 wzyE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007708 wzyE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008561 wzyE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008862 wzyE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003807 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003766 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004893 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008735 wzyE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008370 wzyE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008206 wzyE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007600 wzyE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112673 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085091 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102107 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005236 wzyE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009114 wzyE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008666 wzyE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004148 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009545 wzyE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007454 wzyE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004464 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075148 wzyE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090082 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003941 wecF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004320 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001939 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000563 rffT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003528 rffT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003091 wzyE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003326 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241894 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004627 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000206 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007656 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003523 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128286 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006015 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006464 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000837 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009074 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007229 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029973 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006911 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000139 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004167 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008317 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004123 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000192 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000223 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004777 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4070544 to 4081896
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003522rffHCDSforward40705514071432Upstream
AEC-0003523rffCCDSforward40714104072084Upstream
AEC-0003524rffACDSforward40720894073219Upstream
AEC-0003525wzxECDSforward40732214074471Upstream
AEC-0004040rffTCDSforward40744684075547Overlaps Upstream
AEC-0003526wzyECDSforward40755444076896Matches
AEC-0003527rffMCDSforward40768994077639Downstream
AEC-0003528yifKCDSforward40778304079215Downstream
AEC-0004176argXtRNAforward40793184079394Downstream
AEC-0004177hisRtRNAforward40794524079528Downstream
AEC-0004178leuTtRNAforward40795494079635Downstream
AEC-0004179proMtRNAforward40796784079754Downstream
AEC-0003529aslBCDSforward40799014081136Downstream
AEC-0003530aslACDScomplement40812954082950Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948