Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003527 (rffM) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003527 showshow history
Names
rffM ECDH10B_3984
Product
UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4076899 4077639 741 247
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004629 (IPR004629 Glycosyl transferase WecG/TagA/CpsF) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004629
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffM Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012394
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3984 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase Experimental - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004629 Glycosyl transferase WecG/TagA/CpsF Protein Sequence Similarity - InterPro Domain: IPR004629
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012394 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012394
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004629
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001253 rffM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001164 rffM CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014980 rffM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000229 wecG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001686 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007911 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004028 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007254 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003835 wecG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010434 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009562 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006207 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080908 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009754 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010114 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004354 rffM CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008740 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002607 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008557 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007070 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007261 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009855 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010061 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008264 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007873 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005659 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007500 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009684 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008727 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006940 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028932 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009762 wecG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008698 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012394 rffM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003559 rffM CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004156 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004155 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134812 rffM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004765 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004361 rffM CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064531 rffM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002500 wecG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001138 wecG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003438 rffM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008321 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003906 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004490 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008561 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012329 wecG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010711 wecG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007625 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008615 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008554 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007523 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008495 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007709 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008562 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008861 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003808 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003767 rffM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004894 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008736 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008369 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008207 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007601 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112672 rffM CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085090 rffM CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102110 rffM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005235 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009115 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008667 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004149 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009544 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007453 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004463 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075147 rffM CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090083 rffM CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003940 wecG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004321 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001938 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000567 rffM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003279 tagA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003092 rffM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003327 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241906 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004628 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000207 rffM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007655 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003524 rffM CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128285 rffM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006016 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006465 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000838 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009073 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007230 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029974 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006912 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000140 rffM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004166 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008316 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004124 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000193 rffM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000224 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004776 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4071899 to 4082639
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003523rffCCDSforward40714104072084Upstream
AEC-0003524rffACDSforward40720894073219Upstream
AEC-0003525wzxECDSforward40732214074471Upstream
AEC-0004040rffTCDSforward40744684075547Upstream
AEC-0003526wzyECDSforward40755444076896Upstream
AEC-0003527rffMCDSforward40768994077639Matches
AEC-0003528yifKCDSforward40778304079215Downstream
AEC-0004176argXtRNAforward40793184079394Downstream
AEC-0004177hisRtRNAforward40794524079528Downstream
AEC-0004178leuTtRNAforward40795494079635Downstream
AEC-0004179proMtRNAforward40796784079754Downstream
AEC-0003529aslBCDSforward40799014081136Downstream
AEC-0003530aslACDScomplement40812954082950Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948