Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003534 (cyaY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003534 showshow history
Names
cyaY ECDH10B_3998
Product
frataxin, iron-binding and oxidizing protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4090682 4091002 321 107
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002908 (IPR002908 Frataxin/CyaY) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cyaY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012435
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3998 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product frataxin, iron-binding and oxidizing protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002908 Frataxin/CyaY Protein Sequence Similarity - InterPro Domain: IPR002908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012435 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012435
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001550 cyaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001913 cyaY CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015008 cyaY CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001701 cyaY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007896 cyaY CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004042 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007239 cyaY CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003844 cyaB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010421 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008934 cyaY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006222 CyaY CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080922 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006267 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009609 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004368 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008755 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002618 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008574 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007087 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007278 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008490 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010078 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008247 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007890 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005676 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007517 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009482 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008838 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006957 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028945 cyaY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009560 cyaY CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008714 cyaY CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012435 cyaY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003545 cyaY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004170 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004168 cyaY CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134827 cyaY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004781 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004375 cyaY CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064511 cyaY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003340 cyaY CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004303 cyaY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003414 cyaY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008336 cyaY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003891 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004503 cyaY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008573 cyaY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012360 cyaY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010681 cyaY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007612 cyaY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008627 cyaY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008224 cyaY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007538 cyaY CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008151 cyaY CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007724 cyaY CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008575 cyaY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008848 cyaY CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003823 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003782 cyaY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004913 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008751 cyaY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008888 cyaY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008220 cyaY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007614 cyaY CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112650 cyaY CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085076 cyaY CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102147 cyaY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005223 cyaY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008830 cyaY CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007983 cyaY CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004161 cyaY CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009683 cyaY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006785 cyaY CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004448 cyaY CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075131 cyaY CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090097 cyaY CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003925 cyaY CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004333 cyaY CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001931 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000596 cyaY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002507 cyaY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001710 cyaY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003857 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241940 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004644 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000224 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007641 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003532 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128248 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008091 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006479 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002800 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008475 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007469 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029989 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006925 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000154 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004152 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008149 cyaY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004138 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000206 cyaY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000239 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004763 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4085682 to 4096002
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003532hemDCDScomplement40860314086771Downstream
AEC-0003533hemCCDScomplement40867684087709Downstream
AEC-0003534cyaYCDScomplement40906824091002Matches
AEC-0003535yzcXCDSforward40907934091278Overlaps Upstream
AEC-0004099yifLCDSforward40914654091668Upstream
AEC-0003536dapFCDSforward40917054092529Upstream
AEC-0003537xerCCDSforward40932304094126Upstream
AEC-0003538yigBCDSforward40941264094842Upstream
AEC-0003539uvrDCDSforward40949264097088Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948