Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003545 (pldA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003545 showshow history
Names
pldA ECDH10B_4012
Product
outer membrane phospholipase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4101805 4102674 870 290
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003187 (IPR003187 Phospholipase A1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004620 phospholipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pldA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012479
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4012 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane phospholipase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003187 Phospholipase A1 Protein Sequence Similarity - InterPro Domain: IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012479 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012479
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004620 phospholipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001468 pldA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001581 pldA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015021 pldA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000248 pldA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001717 pldA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007877 pldA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004057 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007224 pldA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003860 pldA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010405 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008916 pldA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006241 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080938 pldA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006287 pldA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009591 pldA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004384 pldA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008775 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002635 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008592 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007105 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007296 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008472 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010095 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008229 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007907 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005694 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007534 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009500 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008820 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006975 pldA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028965 pldA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009544 pldA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008731 pldA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012479 pldA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003531 pldA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004191 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004184 pldA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134841 pldA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004798 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004393 pldA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064499 pldA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003342 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001124 pldA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002548 pldA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008352 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003879 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004519 pldA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008587 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012391 pldA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010649 pldA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007598 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008640 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008238 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007551 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008167 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007740 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008589 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008834 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003837 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003796 pldA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004930 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008766 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008874 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008232 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007626 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112624 pldA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085062 pldA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102191 pldA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005209 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008816 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007997 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004178 pldA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009705 pldA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006760 pldA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004429 pldA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075107 pldA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090115 pldA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003906 pldA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004351 pldA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003373 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000631 pldA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002520 pldA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001695 pldA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003171 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241972 pldA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004659 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000238 pldA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007627 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003545 pldA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128211 pldA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008105 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006493 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002814 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008489 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007483 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030002 pldA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006939 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000168 pldA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004137 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008135 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004152 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000219 pldA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000255 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004747 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4096805 to 4107674
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003539uvrDCDSforward40949264097088Upstream
AEC-0004035yigECDScomplement40972354097999Upstream
AEC-0003540corACDSforward40983694099319Upstream
AEC-0003541yigFCDScomplement40993624099742Upstream
AEC-0003542yigGCDScomplement40997564100136Upstream
AEC-0003543rarDCDScomplement41002314101121Upstream
AEC-0003544yigICDScomplement41011734101640Upstream
AEC-0003545pldACDSforward41018054102674Matches
AEC-0003546recQCDSforward41028074104636Downstream
AEC-0003547rhtCCDSforward41047004105320Downstream
AEC-0003548rhtBCDScomplement41053824106002Downstream
AEC-0003549pldBCDSforward41061134107135Downstream
AEC-0003550yigLCDSforward41071434107943Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948