Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003547 (rhtC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003547 showshow history
Names
rhtC ECDH10B_4014
Product
threonine efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4104700 4105320 621 207
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004778 (IPR004778 Homoserine/Threonine efflux protein) Jul 2009
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhtC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012487
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4014 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product threonine efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004778 Homoserine/Threonine efflux protein Protein Sequence Similarity - InterPro Domain: IPR004778
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012487 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012487
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001877 rhtC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001949 rhtC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015023 rhtC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001720 rhtC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007875 rhtC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004059 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007222 rhtC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003862 rhtC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010403 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008914 rhtC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006243 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080941 rhtC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006289 rhtC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009589 rhtC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004386 rhtC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008777 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002637 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008594 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007107 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007298 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008470 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010097 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008227 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007909 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005696 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007536 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009502 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008818 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006977 rhtC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028967 rhtC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009542 rhtC_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008733 rhtC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012487 rhtC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003529 rhtC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004193 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004186 rhtC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134843 rhtC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004800 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004396 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064497 rhtC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002451 rhtC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001122 rhtC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002546 rhtC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008354 rhtC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003877 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004521 rhtC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008589 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012399 rhtC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010641 rhtC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007596 rhtC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008642 rhtC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008240 rhtC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007553 rhtC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008169 rhtC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007742 rhtC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008591 rhtC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008832 rhtC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003839 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003798 rhtC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004932 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008768 rhtC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008464 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008234 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007628 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112618 rhtC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085060 rhtC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102193 rhtC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005207 rhtC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008814 rhtC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007999 rhtC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004180 yigJ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009707 rhtC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006758 rhtC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004427 yigJ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075105 yigJ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090117 yigJ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003904 yigJ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004353 rhtC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003375 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000639 rhtC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002522 rhtC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001693 rhtC_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003173 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241974 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004661 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000241 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007625 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003547 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128199 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008107 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006495 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001027 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008491 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007485 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030004 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006941 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000171 rhtC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004135 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008133 rhtC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004154 rhtC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000221 rhtC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000258 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004745 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4099700 to 4110320
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003541yigFCDScomplement40993624099742Upstream
AEC-0003542yigGCDScomplement40997564100136Upstream
AEC-0003543rarDCDScomplement41002314101121Upstream
AEC-0003544yigICDScomplement41011734101640Upstream
AEC-0003545pldACDSforward41018054102674Upstream
AEC-0003546recQCDSforward41028074104636Upstream
AEC-0003547rhtCCDSforward41047004105320Matches
AEC-0003548rhtBCDScomplement41053824106002Downstream
AEC-0003549pldBCDSforward41061134107135Downstream
AEC-0003550yigLCDSforward41071434107943Downstream
AEC-0003551metRCDScomplement41088064109759Downstream
AEC-0003552metECDSforward41099964112257Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948