Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003548 (rhtB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003548 showshow history
Names
rhtB ECDH10B_4015
Product
neutral amino-acid efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4105382 4106002 621 207
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004778 (IPR004778 Homoserine/Threonine efflux protein) Jul 2009
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhtB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012490
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4015 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product neutral amino-acid efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR004778 Homoserine/Threonine efflux protein Protein Sequence Similarity - InterPro Domain: IPR004778
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012490 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012490
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001623 rhtB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001959 rhtB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015026 rhtB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000250 rhtB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007874 rhtB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004060 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007221 rhtB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003863 rhtB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010401 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008913 rhtB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006244 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080942 rhtB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006290 rhtB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009588 rhtB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004388 rhtB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008778 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002638 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008595 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007108 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007299 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008469 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010098 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008226 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007910 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005697 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007537 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009503 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008817 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006978 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028968 rhtB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009182 rhtB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008734 rhtB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012490 rhtB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003528 rhtB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004194 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004187 rhtB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134844 rhtB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004801 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004397 rhtB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064496 rhtB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004542 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002243 rhtB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002544 rhtB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008355 rhtB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003876 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004522 rhtB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008590 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012402 rthB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010637 rthB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007595 rhtB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008643 rhtB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008241 rhtB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007554 rhtB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008170 rhtB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007743 rhtB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008592 rhtB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008831 rhtB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003840 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003799 rhtB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004933 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008769 rhtB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008463 rhtB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008235 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007629 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112616 rhtB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085059 rhtB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102195 rhtB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005206 rhtB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008813 rhtB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008000 rhtB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004181 yigK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009708 rhtB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006757 rhtB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004426 yigK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075103 rhtB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090118 yigK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003903 yigK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004354 rhtB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003376 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000643 rhtB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002523 rhtB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001692 rhtB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003174 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241981 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004662 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000242 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007624 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003548 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128191 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008108 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006496 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001028 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008492 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007486 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030005 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006942 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000172 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004133 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008132 rhtB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004155 rhtB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000222 rhtB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000259 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004743 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4100382 to 4111002
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003543rarDCDScomplement41002314101121Downstream
AEC-0003544yigICDScomplement41011734101640Downstream
AEC-0003545pldACDSforward41018054102674Downstream
AEC-0003546recQCDSforward41028074104636Downstream
AEC-0003547rhtCCDSforward41047004105320Downstream
AEC-0003548rhtBCDScomplement41053824106002Matches
AEC-0003549pldBCDSforward41061134107135Upstream
AEC-0003550yigLCDSforward41071434107943Upstream
AEC-0003551metRCDScomplement41088064109759Upstream
AEC-0003552metECDSforward41099964112257Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948