Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003549 (pldB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003549 showshow history
Names
pldB ECDH10B_4016
Product
lysophospholipase L(2)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4106113 4107135 1023 341
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000073 (IPR000073 Alpha/beta hydrolase fold-1) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pldB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012494
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4016 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lysophospholipase L(2) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000073 Alpha/beta hydrolase fold-1 Protein Sequence Similarity - InterPro Domain: IPR000073
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012494 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012494
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001012 pldB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001027 pldB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015027 pldB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000251 pldB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001722 pldB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007873 pldB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004061 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007220 pldB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003864 pldB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010400 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008912 pldB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006245 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080943 pldB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006291 pldB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009587 pldB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004389 pldB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008779 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002639 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008596 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007109 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007300 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008468 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010099 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008225 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007911 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005698 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007538 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009504 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008816 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006979 pldB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028969 pldB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009181 pldB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008735 pldB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012494 pldB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003527 pldB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004195 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004188 pldB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134845 pldB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004802 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004398 pldB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064495 pldB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002450 pldB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001121 pldB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002543 pldB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008356 pldB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003875 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004523 pldB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008591 pldB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012406 pldB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010635 pldB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007594 pldB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008644 pldB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008242 pldB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007555 pldB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008171 pldB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007744 pldB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008593 pldB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008830 pldB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003841 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003800 pldB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004934 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008770 pldB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008462 pldB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008236 pldB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007630 pldB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112614 pldB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085058 pldB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102199 pldB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005205 pldB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008812 pldB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008001 pldB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004182 pldB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009709 pldB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006756 pldB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004425 pldB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075102 pldB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090119 pldB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003902 pldB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004355 pldB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003377 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000647 pldB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002524 pldB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001691 pldB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003175 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241988 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004663 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000244 pldB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007623 pldB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003549 pldB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128189 pldB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008109 pldB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006497 pldB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001029 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008493 pldB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007487 pldB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030006 pldB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006943 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000174 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004132 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008131 pldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004156 pldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000223 pldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000261 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004742 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4101113 to 4112135
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003543rarDCDScomplement41002314101121Upstream
AEC-0003544yigICDScomplement41011734101640Upstream
AEC-0003545pldACDSforward41018054102674Upstream
AEC-0003546recQCDSforward41028074104636Upstream
AEC-0003547rhtCCDSforward41047004105320Upstream
AEC-0003548rhtBCDScomplement41053824106002Upstream
AEC-0003549pldBCDSforward41061134107135Matches
AEC-0003550yigLCDSforward41071434107943Downstream
AEC-0003551metRCDScomplement41088064109759Downstream
AEC-0003552metECDSforward41099964112257Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948