Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003550 (yigL) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003550 showshow history
Names
yigL ECDH10B_4017
Product
predicted hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4107143 4107943 801 267
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000150 (IPR000150 Cof family) Jul 2009
Automated Process Approved IPR006379 (IPR006379 HAD-superfamily hydrolase, subfamily IIB) Jul 2009
Automated Process Approved IPR013200 (IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yigL Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012500
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4017 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3 Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006379 HAD-superfamily hydrolase, subfamily IIB Protein Sequence Similarity - InterPro Domain: IPR006379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012500 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012500
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001759 yigL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001127 yigL CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015028 yigL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000252 yigL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001723 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007872 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004062 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007219 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003865 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010399 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008911 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006246 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080944 yigL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006292 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009586 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004390 yigL CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008780 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002640 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008597 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007110 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007301 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008467 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010100 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008224 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007912 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005699 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007539 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009505 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008815 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006980 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028970 yigL CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009180 yigL CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008736 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012500 yigL CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003526 yigL CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004196 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004189 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134846 yigL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004803 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004399 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064494 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002449 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001120 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002542 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003874 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004524 yigL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012408 yigL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010631 yigL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003842 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003801 yigL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004935 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112610 yigL CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085057 yigL CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102202 yigL CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004183 yigL CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009710 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006755 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004424 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075101 yigL CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090120 yigL CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003901 yigL CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004356 yigL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003378 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000649 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002525 cof_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001690 cof_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003176 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241989 cof3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004664 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000245 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007622 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003550 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128186 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008110 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006498 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001030 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008494 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007488 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030007 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006944 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000175 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004131 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008130 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004157 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000224 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000262 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004741 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4102143 to 4112943
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003545pldACDSforward41018054102674Upstream
AEC-0003546recQCDSforward41028074104636Upstream
AEC-0003547rhtCCDSforward41047004105320Upstream
AEC-0003548rhtBCDScomplement41053824106002Upstream
AEC-0003549pldBCDSforward41061134107135Upstream
AEC-0003550yigLCDSforward41071434107943Matches
AEC-0003551metRCDScomplement41088064109759Downstream
AEC-0003552metECDSforward41099964112257Downstream
AEC-0003553ysgACDScomplement41122974113112Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948