Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003554 (udp) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003554 showshow history
Names
udp ECDH10B_4022
Product
uridine phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4113374 4114135 762 254
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010058 (IPR010058 Uridine phosphorylase) Jul 2009
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004850 uridine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name udp Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012528
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4022 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product uridine phosphorylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010058 Uridine phosphorylase Protein Sequence Similarity - InterPro Domain: IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012528 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012528
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004850 uridine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000821 udp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001394 udp CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017718 udp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000259 udp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001728 udp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007859 udp CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004082 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007214 udp CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003885 udp CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010393 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008907 udp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006251 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080969 udp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006298 udp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009582 udp CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004409 udp CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008785 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002645 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008602 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007115 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007306 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008462 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010105 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008219 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007917 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005704 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007544 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009510 udp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008810 udp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006985 udp CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028975 udp CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009158 udp CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008741 udp CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012528 udp CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003521 udp CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004201 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004204 udp CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134851 udp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004808 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004420 udp CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060386 udp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000129 udp CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000049 udp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003037 udp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008365 udp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003868 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004531 udp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008598 udp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012429 udp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010611 udp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007586 udp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008651 udp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008249 udp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007562 udp CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008179 udp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007752 udp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008600 udp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008822 udp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003848 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003807 udp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004944 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008779 udp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008455 udp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008243 udp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007637 udp CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112596 udp CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085051 udp CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102222 udp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005196 udp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008804 udp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008009 udp CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004191 udp CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009720 udp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006748 udp CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004419 udp CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075094 udp CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090125 udp CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003896 udp CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004363 udp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001894 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000783 udp CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002567 udp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001649 udp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001970 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242121 udp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007769 udp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000305 udp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007576 udp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003591 udp CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128015 udp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008154 udp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006542 udp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002204 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008537 udp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007533 udp CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030051 udp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006988 udp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000233 udp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004074 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008084 udp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004201 udp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000268 udp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000319 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004683 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4108374 to 4119135
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003551metRCDScomplement41088064109759Upstream
AEC-0003552metECDSforward41099964112257Upstream
AEC-0003553ysgACDScomplement41122974113112Upstream
AEC-0003554udpCDSforward41133744114135Matches
AEC-0003555rmuCCDSforward41142764115703Downstream
AEC-0003556ubiECDSforward41157984116553Downstream
AEC-0003557yigPCDSforward41165674117172Downstream
AEC-0003558ubiBCDSforward41171694118809Downstream
AEC-0003559tatACDSforward41188884119157Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948