Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003556 (ubiE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003556 showshow history
Names
ubiE ECDH10B_4024
Product
bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4115798 4116553 756 252
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004033 (IPR004033 UbiE/COQ5 methyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004033
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ubiE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012534
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4024 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004033 UbiE/COQ5 methyltransferase Protein Sequence Similarity - InterPro Domain: IPR004033
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012534 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012534
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004033
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000457 ubiE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000478 ubiE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017729 ubiE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000261 ubiE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001730 ubiE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007851 ubiE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004090 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007212 ubiE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003900 ubiE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010390 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008905 ubiE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006253 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080978 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006300 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009580 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004411 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008787 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002648 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008604 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007117 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007308 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008460 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010107 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008217 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007919 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005706 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007546 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009512 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008808 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006987 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028977 ubiE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009150 ubiE_3 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008743 ubiE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012534 ubiE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003519 ubiE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004203 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004212 ubiE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134853 ubiE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004811 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004429 ubiE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060397 ubiE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000123 ubiE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000055 ubiE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003753 ubiE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008367 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003866 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004533 ubiE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008600 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012436 ubiE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010603 ubiE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007584 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008653 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008251 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007564 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008181 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007754 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008602 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008820 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003850 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003809 ubiE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004946 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008781 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008453 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008245 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007639 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112592 ubiE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085049 ubiE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102228 ubiE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005194 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008802 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008011 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004193 ubiE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009722 ubiE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006746 ubiE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004417 ubiE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075092 ubiE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090127 ubiE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003894 ubiE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004365 ubiE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003202 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000800 ubiE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002572 ubiE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001644 ubiE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001965 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242148 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007764 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000310 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007571 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003596 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127986 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008159 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006547 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002199 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008542 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007538 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030056 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006993 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000238 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004069 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008079 ubiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004206 ubiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000273 ubiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000324 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004678 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4110798 to 4121553
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003552metECDSforward41099964112257Upstream
AEC-0003553ysgACDScomplement41122974113112Upstream
AEC-0003554udpCDSforward41133744114135Upstream
AEC-0003555rmuCCDSforward41142764115703Upstream
AEC-0003556ubiECDSforward41157984116553Matches
AEC-0003557yigPCDSforward41165674117172Downstream
AEC-0003558ubiBCDSforward41171694118809Downstream
AEC-0003559tatACDSforward41188884119157Downstream
AEC-0003560tatBCDSforward41191614119676Downstream
AEC-0003561tatCCDSforward41196794120455Downstream
AEC-0004041tatDCDSforward41204974121279Downstream
AEC-0003562rfaHCDScomplement41212764121764Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948