Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003558 (ubiB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003558 showshow history
Names
ubiB ECDH10B_4026
Product
2-octaprenylphenol hydroxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4117169 4118809 1641 547
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010232 (IPR010232 Probable protein kinase UbiB) Jul 2009
Automated Process Approved IPR011009 (IPR011009 Protein kinase-like domain superfamily) Jul 2009
Automated Process Approved IPR004147 (IPR004147 UbiB domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010232
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ubiB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012539
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4026 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-octaprenylphenol hydroxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010232 Probable protein kinase UbiB Protein Sequence Similarity - InterPro Domain: IPR010232
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004147 UbiB domain Protein Sequence Similarity - InterPro Domain: IPR004147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011009 Protein kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011009
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012539 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012539
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010232
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000458 ubiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000479 ubiB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017731 ubiB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000263 ubiB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001732 ubiB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007849 ubiB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004092 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007210 ubiB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003902 ubiB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010388 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008903 ubiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006255 UbiB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080980 ubiB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006302 ubiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009578 ubiB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004413 ubiB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008789 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002650 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008606 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007119 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007310 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008458 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010109 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008215 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007921 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005708 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007548 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009514 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008806 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006989 ubiB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028979 ubiB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009148 ubiB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008745 ubiB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012539 ubiB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003517 ubiB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004205 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004214 ubiB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134855 ubiB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004813 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004431 ubiB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060399 ubiB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000121 ubiB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000057 ubiB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003755 ubiB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008369 ubiB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003864 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004535 ubiB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008602 ubiB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012442 aarF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010598 aarF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007582 ubiB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008655 ubiB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008253 ubiB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007566 ubiB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008183 ubiB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007756 ubiB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008604 ubiB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008818 ubiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003852 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003811 ubiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004948 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008783 ubiB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008451 ubiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008247 ubiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007641 ubiB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112590 ubiB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085047 ubiB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102234 ubiB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005192 ubiB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008800 ubiB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008013 ubiB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004195 yigR CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009724 ubiB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006744 ubiB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004415 yigR CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075090 ubiB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090129 ubiB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003892 yigR CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004367 ubiB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003204 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000805 aarF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002574 ubiB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001642 ubiB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001963 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242150 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007762 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000312 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007569 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003598 aarF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127983 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008161 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006549 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002197 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008544 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007540 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030058 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006995 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000240 ubiB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004067 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008077 ubiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004208 ubiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000275 ubiB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000326 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004676 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4112169 to 4123809
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003552metECDSforward41099964112257Upstream
AEC-0003553ysgACDScomplement41122974113112Upstream
AEC-0003554udpCDSforward41133744114135Upstream
AEC-0003555rmuCCDSforward41142764115703Upstream
AEC-0003556ubiECDSforward41157984116553Upstream
AEC-0003557yigPCDSforward41165674117172Overlaps Upstream
AEC-0003558ubiBCDSforward41171694118809Matches
AEC-0003559tatACDSforward41188884119157Downstream
AEC-0003560tatBCDSforward41191614119676Downstream
AEC-0003561tatCCDSforward41196794120455Downstream
AEC-0004041tatDCDSforward41204974121279Downstream
AEC-0003562rfaHCDScomplement41212764121764Downstream
AEC-0003563ubiDCDSforward41219314123424Downstream
AEC-0003564freCDSforward41234704124171Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948