Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003564 (fre) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003564 showshow history
Names
fre ECDH10B_4033
Product
flavin reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4123470 4124171 702 234
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001221 (IPR001221 (DEPRECATED) Phenol hydroxylase reductase) Jul 2009
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Jul 2009
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fre Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012559
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4033 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product flavin reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001221 (DEPRECATED) Phenol hydroxylase reductase Protein Sequence Similarity - InterPro Domain: IPR001221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012559 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012559
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000865 fre CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000947 fre CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017740 fre CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000270 fre CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001739 fre CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007842 fre CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004099 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007203 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003909 fre CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010381 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008896 fre CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006262 fre pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080987 fre CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006309 fre CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009571 fre CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004420 fre CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008796 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002657 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008613 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007126 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007317 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008451 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010116 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008208 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007928 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005715 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007555 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009521 fre CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008799 fre CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006996 fre CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028986 fre CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009141 fre CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008752 fre CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012559 fre CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003510 fre CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004212 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004221 fre CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134862 fre CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004820 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004438 fre CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060407 fre CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000114 fre CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000062 fre CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003763 fre CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008376 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003857 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004542 fre CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008609 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012463 ubiB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010577 ubiB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007575 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008662 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008260 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007573 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008190 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007763 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008611 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008811 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003859 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003818 fre CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004956 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008790 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008444 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008254 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007648 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112576 fre CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085040 fre CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102253 fre CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005185 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008793 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008020 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004202 fre CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009731 fre CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006737 fre CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004408 fre CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075082 fre CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090136 fre CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003885 ubiB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004374 fre CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003212 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000827 fadI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002582 fre CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001634 fre CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001955 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242169 fre CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006024 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004103 fre CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007558 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003607 fre CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127945 fre CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008676 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006560 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003269 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008555 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007551 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030070 fre CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007006 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000251 fre CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004059 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004406 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004216 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000283 fre CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000334 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004668 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4118470 to 4129171
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003558ubiBCDSforward41171694118809Upstream
AEC-0003559tatACDSforward41188884119157Upstream
AEC-0003560tatBCDSforward41191614119676Upstream
AEC-0003561tatCCDSforward41196794120455Upstream
AEC-0004041tatDCDSforward41204974121279Upstream
AEC-0003562rfaHCDScomplement41212764121764Upstream
AEC-0003563ubiDCDSforward41219314123424Upstream
AEC-0003564freCDSforward41234704124171Matches
AEC-0003565fadACDScomplement41245524125715Downstream
AEC-0003566fadBCDScomplement41257254127914Downstream
AEC-0003567pepQCDSforward41281044129435Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948