Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003565 (fadA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003565 showshow history
Names
fadA ECDH10B_4034
Product
3-ketoacyl-CoA thiolase (thiolase I)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4124552 4125715 1164 388
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002155 (IPR002155 Thiolase) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Automated Process Approved IPR012805 (IPR012805 Acetyl-CoA C-acyltransferase FadA) Jul 2009
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2009
Automated Process Approved IPR016038 (IPR016038 (DEPRECATED) Thiolase-like, subgroup) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003988 acetyl-CoA C-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012562
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4034 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-ketoacyl-CoA thiolase (thiolase I) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012805 Acetyl-CoA C-acyltransferase FadA Protein Sequence Similarity - InterPro Domain: IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002155 Thiolase Protein Sequence Similarity - InterPro Domain: IPR002155
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016038 (DEPRECATED) Thiolase-like, subgroup Protein Sequence Similarity - InterPro Domain: IPR016038
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012562 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012562
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003988 acetyl-CoA C-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012805
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016039
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000829 fadA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001298 fadA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017745 fadA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000271 fadA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001741 fadA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007841 fadA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004100 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007202 fadA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003910 fadA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010380 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008895 fadA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006263 FadA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080988 fadA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006310 fadA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009570 fadA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004421 fadA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008797 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008614 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007127 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007318 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008450 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010117 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008207 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007929 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005716 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007556 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009522 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008798 fadA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006997 fadA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028987 fadA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009140 fadA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008754 fadA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012562 fadA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003509 fadA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004213 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004222 fadA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134863 fadA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004821 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004439 fadA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060408 fadA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003568 fadA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003447 fadA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003765 fadA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008378 fadA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003856 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004545 fadA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008611 fadA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012469 fadA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010567 fadA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007573 fadA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008664 fadA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008262 fadA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007575 fadA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008192 fadA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007765 fadA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008613 fadA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008809 fadA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003861 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003820 fadA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004958 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008792 fadA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008439 fadA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008256 fadA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007650 fadA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112570 fadA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085038 fadA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102261 fadA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005183 fadA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008791 fadA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008022 fadA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004203 fadA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009732 fadA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006736 fadA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004407 fadA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075080 fadA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090137 fadA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003884 fadA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004375 fadA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003213 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000830 fadA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002583 fadA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001633 fadA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001954 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242171 fadA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006025 fadA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004102 fadA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007557 fadA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003608 fadA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127940 fadA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008677 fadA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006561 fadA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003270 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008556 fadA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007552 fadA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030071 fadA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007008 fadA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000252 fadA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004058 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004407 fadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004217 fadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000284 fadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000335 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004667 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4119552 to 4130715
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003560tatBCDSforward41191614119676Downstream
AEC-0003561tatCCDSforward41196794120455Downstream
AEC-0004041tatDCDSforward41204974121279Downstream
AEC-0003562rfaHCDScomplement41212764121764Downstream
AEC-0003563ubiDCDSforward41219314123424Downstream
AEC-0003564freCDSforward41234704124171Downstream
AEC-0003565fadACDScomplement41245524125715Matches
AEC-0003566fadBCDScomplement41257254127914Upstream
AEC-0003567pepQCDSforward41281044129435Upstream
AEC-0003568yigZCDSforward41294354130049Upstream
AEC-0003569trkHCDSforward41300884131539Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948