Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003566 (fadB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003566 showshow history
Names
fadB ECDH10B_4035
Product
fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4125725 4127914 2190 730
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006180 (IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site) Jul 2009
Automated Process Approved IPR012799 (IPR012799 Fatty oxidation complex, alpha subunit FadB) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Jul 2009
Automated Process Approved IPR006176 (IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding) Jul 2009
Automated Process Approved IPR006108 (IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009062 fatty acid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004165 dodecenoyl-CoA delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012564
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4035 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012799 Fatty oxidation complex, alpha subunit FadB Protein Sequence Similarity - InterPro Domain: IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006108
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Protein Sequence Similarity - InterPro Domain: IPR006176
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012564 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012564
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009062 fatty acid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006180
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004165 dodecenoyl-CoA delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001308 fadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001499 fadB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017746 fadB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000272 fadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001742 fadB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007840 fadB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004101 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007201 fadB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003911 fadB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010379 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008894 fadB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006264 FadB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080989 fadB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006311 fadB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009569 fadB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004422 fadB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008798 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002659 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008615 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007128 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007319 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008449 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010118 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008206 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007930 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005717 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007557 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009523 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008797 fadB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028988 fadB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009139 fadB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008755 fadB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012564 fadB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003508 fadB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004214 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004223 fadB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134864 fadB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004822 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004440 fadB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060409 fadB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000118 fadB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001270 fadB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003766 fadB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008379 fadB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003855 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004546 fadB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008612 fadB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012476 fadB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010560 fadB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007572 fadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008665 fadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008263 fadB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007576 fadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008193 fadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007766 fadB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008614 fadB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008808 fadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003862 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003821 fadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004959 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008793 fadB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008438 fadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008257 fadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007651 fadB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112564 fadB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085037 fadB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102264 fadB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005182 fadB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008790 fadB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008023 fadB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009733 fadB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006735 fadB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004406 fadB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075079 fadB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090138 fadB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003883 fadB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004376 fadB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003214 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000837 fadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002584 fadB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001632 fadB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001953 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242172 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006026 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004101 fadB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007556 fadB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003609 fadB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127934 fadB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008678 fadB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006562 fadB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003271 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008557 fadB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007553 fadB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030072 fadB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007009 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000253 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004057 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004408 fadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004218 fadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000285 fadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000336 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004666 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4120725 to 4132914
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004041tatDCDSforward41204974121279Downstream
AEC-0003562rfaHCDScomplement41212764121764Downstream
AEC-0003563ubiDCDSforward41219314123424Downstream
AEC-0003564freCDSforward41234704124171Downstream
AEC-0003565fadACDScomplement41245524125715Downstream
AEC-0003566fadBCDScomplement41257254127914Matches
AEC-0003567pepQCDSforward41281044129435Upstream
AEC-0003568yigZCDSforward41294354130049Upstream
AEC-0003569trkHCDSforward41300884131539Upstream
AEC-0003570hemGCDSforward41315514132096Upstream
AEC-0004231rrsArRNAforward41324744134015Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948