Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003581 (hemN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003581 showshow history
Names
hemN ECDH10B_4057
Product
coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4148988 4150361 1374 458
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004558 (IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN) Jul 2009
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Jul 2009
Automated Process Approved IPR010723 (IPR010723 HemN, C-terminal) Jul 2009
Automated Process Approved IPR006638 (IPR006638 Elp3/MiaB/NifB) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004109 coproporphyrinogen oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hemN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012629
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4057 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN Protein Sequence Similarity - InterPro Domain: IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010723 HemN, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010723
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006638 Elp3/MiaB/NifB Protein Sequence Similarity - InterPro Domain: IPR006638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012629 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012629
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004109 coproporphyrinogen oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004558
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000893 hemN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001078 hemN CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016303 hemN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000032 hemN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001808 hemN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007600 hemN CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004122 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007174 hemN CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003927 hemN CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010355 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008351 hemN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006552 hemN pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081015 hemN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006335 hemN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007697 hemN CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004444 hemN CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008821 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001089 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008642 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007155 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007346 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006982 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010145 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007941 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007957 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007502 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007585 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007348 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007298 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007027 hemN CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029010 hemN CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009099 hemN_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008779 hemN CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012629 hemN CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003486 hemN CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004237 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004246 hemN CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134885 hemN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001684 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004465 hemN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060228 hemN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000017 hemN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001214 hemN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001472 hemN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008401 hemN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003831 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004576 hemN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008635 hemN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012534 hemN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010397 hemN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007549 hemN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008688 hemN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007886 hemN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007597 hemN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007286 hemN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007788 hemN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008636 hemN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008577 hemN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003883 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003842 hemN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004987 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008817 hemN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006760 hemN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008280 hemN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006871 hemN CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113156 hemN CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085341 hemN CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102317 hemN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005156 hemN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007900 hemN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009149 hemN CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004226 hemN CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009760 hemN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008179 hemN CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004381 hemN CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075057 hemN CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090155 hemN CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003862 hemN CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004397 hemN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000071 hemN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004080 hemN_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003385 hemN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003246 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234285 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004130 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004198 hemN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007826 hemN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003267 hemN CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115384 hemN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007960 hemN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006300 hemN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001991 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009679 hemN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008403 hemN CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033592 hemN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005117 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000321 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004662 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008385 hemN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003951 hemN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000028 hemN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000024 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004972 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4143988 to 4155361
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003578polACDSforward41439094146695Upstream
AEC-0004285spfncRNAforward41468424146950Upstream
AEC-0003579yihACDScomplement41470764147672Upstream
AEC-0004286csrCncRNAforward41479794148223Upstream
AEC-0003580yihICDSforward41482904148799Upstream
AEC-0003581hemNCDSforward41489884150361Matches
AEC-0003582glnGCDScomplement41508124152221Downstream
AEC-0003583glnLCDScomplement41522334153282Downstream
AEC-0003584glnACDScomplement41535684154977Downstream
AEC-0003585bipACDSforward41553504157173Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948