Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003589 (ompL) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003589 showshow history
Names
ompL ECDH10B_4065
Product
predicted outer membrane porin L
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4160546 4161238 693 231
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009331 (IPR009331 Oligogalacturonate-specific porin) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompL Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012659
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4065 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted outer membrane porin L Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009331 Oligogalacturonate-specific porin Protein Sequence Similarity - InterPro Domain: IPR009331
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012659 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012659
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003583 ompL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003875 ompL CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001813 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007591 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007165 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008342 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006562 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007688 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008833 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001100 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008650 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007163 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007354 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006974 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010153 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007933 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007965 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007510 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007593 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007340 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007290 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007035 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029018 ompL CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012659 ompL CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003478 ompL CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004245 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004255 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134893 ompL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001695 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008412 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003824 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004590 yshA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008646 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012572 yshA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010360 yshA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007543 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008694 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007880 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007609 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007297 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007799 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008642 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008588 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003896 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003854 yshA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004995 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008828 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006749 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008291 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006882 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113129 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085329 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102360 yshA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005150 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007888 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005851 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000411 kdgM2_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4155546 to 4166238
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003585bipACDSforward41553504157173Downstream
AEC-0003586yihLCDSforward41573904158100Downstream
AEC-0003587yihMCDSforward41581084159088Downstream
AEC-0003588yihNCDSforward41591904160455Downstream
AEC-0003589ompLCDScomplement41605464161238Matches
AEC-0003590yihOCDScomplement41613064162709Upstream
AEC-0003591yihPCDScomplement41627524164158Upstream
AEC-0003592yihQCDScomplement41641834166219Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948