Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003607 (fdoH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003607 showshow history
Names
fdoH ECDH10B_4083
Product
formate dehydrogenase-O, Fe-S subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4179577 4180479 903 301
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006470 (IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria) Jul 2009
Automated Process Approved IPR014603 (IPR014603 Formate dehydrogenase iron-sulphur subunit) Jul 2009
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Automated Process Approved IPR015246 (IPR015246 Formate dehydrogenase, transmembrane) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdoH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012708
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4083 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product formate dehydrogenase-O, Fe-S subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014603 Formate dehydrogenase iron-sulphur subunit Protein Sequence Similarity - InterPro Domain: IPR014603
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria Protein Sequence Similarity - InterPro Domain: IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015246 Formate dehydrogenase, transmembrane Protein Sequence Similarity - InterPro Domain: IPR015246
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012708 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012708
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002087 fdoH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002073 fdoH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017375 fdoH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001832 fdoH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007572 fdoH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004150 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007146 fdxH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003950 fdoH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010330 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006939 fdoH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006584 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081042 fdoH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006365 fdoH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007664 fdoH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004467 fdoH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008857 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001125 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008672 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007185 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007376 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006952 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010175 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007911 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007988 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007532 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007615 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007318 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007268 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007058 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029042 fdoH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009125 fdoH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008807 fdoH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012708 fdoH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003460 fdoH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004266 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004274 fdoH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134915 fdoH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001720 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004489 fdoH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008436 fdoH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003805 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004610 fdoH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008669 fdoH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012629 fdoH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010309 fdoH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007519 fdoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008718 fdoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007856 fdoH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007632 fdoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007320 fdoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007822 fdoH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008666 fdoH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008612 fdoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003917 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003875 fdoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005019 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008851 fdoH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006725 fdoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008314 fdoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006905 fdoH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113090 fdoH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085308 fdoH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102417 fdoH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005126 fdoH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007865 fdoH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005874 fdoH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004259 fdoH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009789 fdoH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005840 fdoH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004349 fdoH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075020 fdoH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090187 fdoH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003827 fdoH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004423 fdoH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000177 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011922 fdoH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002373 fdoH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002112 fdoH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003008 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243824 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007892 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003626 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007239 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003349 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129009 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005803 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006406 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006171 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006685 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033877 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006697 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004451 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000045 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004754 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008157 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004048 fdoH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004939 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000048 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4174577 to 4185479
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003600yihYCDSforward41738664174738Downstream
AEC-0003601dtdCDSforward41747354175172Downstream
AEC-0003602yiiDCDSforward41751694176158Downstream
AEC-0003603yiiECDSforward41770114177229Downstream
AEC-0003604yiiFCDSforward41774714177689Downstream
AEC-0003605fdhECDScomplement41780194178948Downstream
AEC-0003606fdoICDScomplement41789454179580Overlaps Downstream
AEC-0003607fdoHCDScomplement41795774180479Matches
AEC-0004512fdoGCDScomplement41804924183542Upstream
AEC-0003608fdhDCDSforward41837364184569Upstream
AEC-0003609yiiGCDSforward41847224185777Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948