Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003614 (rhaD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003614 showshow history
Names
rhaD ECDH10B_4092
Product
rhamnulose-1-phosphate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4191168 4191992 825 275
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013447 (IPR013447 Rhamnulose-1-phosphate aldolase) Jul 2009
Automated Process Approved IPR001303 (IPR001303 Class II aldolase/adducin N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008994 rhamnulose-1-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhaD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012731
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4092 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product rhamnulose-1-phosphate aldolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013447 Rhamnulose-1-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR013447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001303 Class II aldolase/adducin N-terminal Protein Sequence Similarity - InterPro Domain: IPR001303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012731 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012731
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0008994 rhamnulose-1-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002212 rhaD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002297 rhaD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018898 rhaD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007564 rhaD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004157 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007134 rhaD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003957 rhaD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010319 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006928 rhaD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006595 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081049 rhaD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006375 rhaD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007653 rhaD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004478 rhaD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008868 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001137 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008684 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007197 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007388 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006940 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010186 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007899 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008000 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007544 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007627 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007305 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007256 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007070 rhaD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029053 rhaD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010016 rhaD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008816 rhaD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012731 rhaD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003451 rhaD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004277 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004288 rhaD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134925 rhaD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001732 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004494 rhaD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060653 rhaD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000305 rhaD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000139 rhaD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002861 rhaD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008452 rhaD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003776 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004622 rhaD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008682 rhaD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012661 rhaD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010283 rhaD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007506 rhaD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008730 rhaD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007844 rhaD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007643 rhaD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007337 rhaD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007839 rhaD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008678 rhaD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008625 rhaD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003927 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003885 rhaD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005032 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008864 rhaD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006712 rhaD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008323 rhaD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006915 rhaD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102444 rhaD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005115 rhaD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007853 rhaD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005887 rhaD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004274 rhaD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005828 rhaD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004342 rhaD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075009 rhaD pseudogene
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090196 rhaD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003817 rhaD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004434 rhaD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002478 rhaD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002960 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235325 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004850 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004719 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007961 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002980 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116423 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006759 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006958 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003566 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005619 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007447 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030210 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004803 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004020 rhaD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004380 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008851 rhaD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007784 rhaD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000414 rhaD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000478 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004564 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4186168 to 4196992
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003610frvRCDScomplement41858274187575Downstream
AEC-0003611frvXCDScomplement41875754188645Downstream
AEC-0003612frvBCDScomplement41886354190086Downstream
AEC-0003613yiiLCDScomplement41908444191158Downstream
AEC-0003614rhaDCDScomplement41911684191992Matches
AEC-0003615rhaACDScomplement41924434193702Upstream
AEC-0003616rhaBCDScomplement41936994195168Upstream
AEC-0003617rhaSCDSforward41954564196292Upstream
AEC-0003618rhaRCDSforward41962764197214Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948