Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003616 (rhaB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003616 showshow history
Names
rhaB ECDH10B_4094
Product
rhamnulokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4193699 4195168 1470 490
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013449 (IPR013449 Rhamnulokinase) Jul 2009
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019301 rhamnose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013449
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008993 rhamnulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013449
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhaB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012738
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4094 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product rhamnulokinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013449 Rhamnulokinase Protein Sequence Similarity - InterPro Domain: IPR013449
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012738 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012738
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019301 rhamnose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013449
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008993 rhamnulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013449
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002161 rhaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002260 rhaB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018900 rhaB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007562 rhaB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004159 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007132 rhaB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003959 rhaB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010317 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006926 rhaB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006597 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081051 rhaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006377 rhaB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007651 rhaB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004480 rhaB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008870 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001139 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008686 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007199 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007390 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006938 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010188 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007897 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008002 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007546 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007629 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007303 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007254 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007072 rhaB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029055 rhaB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007766 rhaB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008818 rhaB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012738 rhaB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003449 rhaB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004279 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004290 rhaB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134927 rhaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001734 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004496 rhaB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060655 rhaB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000300 rhaB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000141 rhaB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002863 rhaB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008454 rhaB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003774 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004625 rhaB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008684 rhaB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012665 rhaB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010278 rhaB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007504 rhaB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008732 rhaB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007842 rhaB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007645 rhaB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007339 rhaB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007841 rhaB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008680 rhaB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008627 rhaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003929 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003887 rhaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005034 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008866 rhaB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006710 rhaB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008325 rhaB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006917 rhaB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113067 rhaB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085296 rhaB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102449 rhaB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005113 rhaB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007851 rhaB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005889 rhaB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004276 rhaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005826 rhaB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075004 rhaB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090198 rhaB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003815 rhaB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004436 rhaB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002476 rhaB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002958 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235327 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004848 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004716 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007959 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002978 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116426 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006757 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006956 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003568 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005621 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007449 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030212 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004801 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004017 rhaB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004377 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008849 rhaB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007782 rhaB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000416 rhaB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000480 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004562 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4188699 to 4200168
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003612frvBCDScomplement41886354190086Downstream
AEC-0003613yiiLCDScomplement41908444191158Downstream
AEC-0003614rhaDCDScomplement41911684191992Downstream
AEC-0003615rhaACDScomplement41924434193702Overlaps Downstream
AEC-0003616rhaBCDScomplement41936994195168Matches
AEC-0003617rhaSCDSforward41954564196292Upstream
AEC-0003618rhaRCDSforward41962764197214Upstream
AEC-0003619rhaTCDScomplement41972114198245Upstream
AEC-0003620sodACDSforward41985304199150Upstream
AEC-0003621kdgTCDSforward41994104200393Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948