Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003620 (sodA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003620 showshow history
Names
sodA ECDH10B_4098
Product
superoxide dismutase, Mn
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4198530 4199150 621 207
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001189 (IPR001189 Manganese/iron superoxide dismutase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sodA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012761
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4098 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product superoxide dismutase, Mn Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001189 Manganese/iron superoxide dismutase Protein Sequence Similarity - InterPro Domain: IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012761 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012761
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000366 sodA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000563 sodA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016112 sodA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003538 sodA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001839 sodA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007557 sodA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004163 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007124 sodA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003970 sodA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010313 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006920 sodA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006602 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081057 sodA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006382 sodA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007646 sodA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004484 sodA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008875 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001145 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008692 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007205 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007396 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006932 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010194 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007891 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008008 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007552 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007635 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007297 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007248 sodA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007078 sodA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029059 sodA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007772 sodA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008823 sodA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012761 sodA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003445 sodA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004284 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004295 sodA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134931 sodA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001740 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004500 sodA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060293 sodA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000068 sodA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000028 sodA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000201 sodA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008465 sodA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003762 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004634 sodA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008695 sodA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012694 sodA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010248 sodA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007493 sodA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008741 sodA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007833 sodA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007656 sodA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007350 sodA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007852 sodA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008691 sodA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008637 sodA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003937 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003895 sodA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005047 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008877 sodA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006700 sodA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008336 sodA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006928 sodA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113052 sodA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085288 sodA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102499 sodA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005102 sodA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007840 sodA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005900 sodA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004280 sodA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009804 sodA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005821 sodA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004336 sodA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075000 sodA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090202 sodA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003811 sodA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004440 sodA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000181 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011934 sodA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002377 sodA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002108 sodA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003012 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243829 sodA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007896 sodA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003621 sodA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007234 sodA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003348 sodA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129017 sodA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005798 sodA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006401 sodA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003997 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006176 sodA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006680 sodA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033880 sodA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006692 sodA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004456 sodA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000040 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004759 sodA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008160 sodA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004045 sodA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004934 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000043 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4193530 to 4204150
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003615rhaACDScomplement41924434193702Upstream
AEC-0003616rhaBCDScomplement41936994195168Upstream
AEC-0003617rhaSCDSforward41954564196292Upstream
AEC-0003618rhaRCDSforward41962764197214Upstream
AEC-0003619rhaTCDScomplement41972114198245Upstream
AEC-0003620sodACDSforward41985304199150Matches
AEC-0003621kdgTCDSforward41994104200393Downstream
AEC-0003622yiiMCDSforward42005424201216Downstream
AEC-0003623cpxACDScomplement42013224202695Downstream
AEC-0003624cpxRCDScomplement42026924203390Downstream
AEC-0004042cpxPCDSforward42035404204040Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948