Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003621 (kdgT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003621 showshow history
Names
kdgT ECDH10B_4099
Product
2-keto-3-deoxy-D-gluconate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4199410 4200393 984 328
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004684 (IPR004684 2-keto-3-deoxygluconate permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kdgT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012764
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4099 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-keto-3-deoxy-D-gluconate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004684 2-keto-3-deoxygluconate permease Protein Sequence Similarity - InterPro Domain: IPR004684
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012764 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012764
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002511 kdgT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002350 kdgT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019248 kdgT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007555 kdgT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004164 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007122 kdgT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003971 kdgT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010312 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006918 kdgT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006604 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081059 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006384 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007644 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004485 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008878 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001148 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008694 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007207 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007398 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006930 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010196 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007889 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008010 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007554 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007637 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007295 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007246 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007080 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029060 kdgT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007774 kdgT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008825 kdgT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012764 kdgT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003444 kdgT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004285 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004297 kdgT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134932 kdgT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001743 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004502 kdgT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064449 kdgT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002439 kdgT CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002235 kdgT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002500 kdgT CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004281 kdgT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009806 kdgT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005820 kdgT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004335 kdgT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074999 kdgT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090203 kdgT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003810 kdgT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004441 kdgT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4194410 to 4205393
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003616rhaBCDScomplement41936994195168Upstream
AEC-0003617rhaSCDSforward41954564196292Upstream
AEC-0003618rhaRCDSforward41962764197214Upstream
AEC-0003619rhaTCDScomplement41972114198245Upstream
AEC-0003620sodACDSforward41985304199150Upstream
AEC-0003621kdgTCDSforward41994104200393Matches
AEC-0003622yiiMCDSforward42005424201216Downstream
AEC-0003623cpxACDScomplement42013224202695Downstream
AEC-0003624cpxRCDScomplement42026924203390Downstream
AEC-0004042cpxPCDSforward42035404204040Downstream
AEC-0003625fieFCDSforward42041894205091Downstream
AEC-0003626pfkACDSforward42052724206234Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948