Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003627 (sbp) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003627 showshow history
Names
sbp ECDH10B_4106
Product
sulfate transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4206554 4207543 990 330
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005669 (IPR005669 Thiosulphate/Sulfate-binding protein) Jul 2009
Automated Process Approved IPR000957 (IPR000957 Sulphate/thiosulphate-binding, conserved site) Jul 2009
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sbp Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012794
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_4106 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product sulfate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR005669 Thiosulphate/Sulfate-binding protein Protein Sequence Similarity - InterPro Domain: IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR000957 Sulphate/thiosulphate-binding, conserved site Protein Sequence Similarity - InterPro Domain: IPR000957
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012794 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012794
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001335 sbp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001422 sbp CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018548 sbp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000104 sbp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001848 sbp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007548 sbp CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004171 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007073 sbp CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003978 sbp CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010302 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006911 sbp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006611 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081067 sbp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006391 sbp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007637 sbp CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004492 sbp CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008886 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001156 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008702 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007215 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007406 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006922 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010204 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007882 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008018 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007562 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007644 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007288 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007238 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007087 sbp CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029067 sbp CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007781 sbp CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008833 sbp CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012794 sbp CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003437 sbp CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004293 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004352 sbp CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134939 sbp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001751 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004510 sbp CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063594 sbp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001908 sbp CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002035 sbp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004060 sbp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008473 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003752 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004643 sbp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008703 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012722 sbp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010220 sbp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007485 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008750 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007824 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007664 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007359 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007861 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008741 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008645 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003945 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003903 sbp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005057 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008885 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006692 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008344 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006936 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113034 sbp CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085280 sbp CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102521 sbp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005094 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007831 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005946 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004288 sbp CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009814 sbp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005812 sbp CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004328 sbp CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074986 sbp CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090212 sbp CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003800 sbp CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004448 sbp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003404 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000290 sbp1 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003186 sbp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002795 sbp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003701 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234406 sbp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004193 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004129 sbp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007767 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003211 sbp CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115577 sbp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007900 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006242 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000963 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005466 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029644 sbp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005060 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004528 sbp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004594 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004381 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004017 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000082 sbp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000088 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004896 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4201554 to 4212543
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003623cpxACDScomplement42013224202695Upstream
AEC-0003624cpxRCDScomplement42026924203390Upstream
AEC-0004042cpxPCDSforward42035404204040Upstream
AEC-0003625fieFCDSforward42041894205091Upstream
AEC-0003626pfkACDSforward42052724206234Upstream
AEC-0003627sbpCDSforward42065544207543Matches
AEC-0003628cdhCDSforward42076504208405Downstream
AEC-0003629tpiACDScomplement42084604209227Downstream
AEC-0003630yiiQCDScomplement42093354209934Downstream
AEC-0003631yiiRCDSforward42100354210475Downstream
AEC-0003632yiiSCDSforward42106874210986Downstream
AEC-0003633yiiTCDSforward42110134211441Downstream
AEC-0003634fprCDScomplement42114464212192Downstream
AEC-0003635glpXCDScomplement42122894213299Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948