Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003628 (cdh) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003628 showshow history
Names
cdh ECDH10B_4107
Product
CDP-diacylglycerol phosphotidylhydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4207650 4208405 756 252
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015993 (IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial) Jul 2009
Automated Process Approved IPR003763 (IPR003763 CDP-diacylglycerol pyrophosphatase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008715 CDP-diacylglycerol diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cdh Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012797
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4107 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product CDP-diacylglycerol phosphotidylhydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial Protein Sequence Similarity - InterPro Domain: IPR015993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003763 CDP-diacylglycerol pyrophosphatase Protein Sequence Similarity - InterPro Domain: IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012797 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012797
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008715 CDP-diacylglycerol diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002233 cdh CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002079 cdh CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019093 cdh CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000105 cdh CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007547 cdh CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004172 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003979 cdh CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010300 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006910 cdh CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006612 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081068 cdh CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006392 cdh CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007636 cdh CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004493 cdh CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008887 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001157 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008703 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007216 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007407 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006921 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010205 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007881 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008019 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007563 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007645 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007287 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007237 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007088 cdh CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029068 cdh CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007782 cdh CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008834 cdh CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012797 cdh CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003436 cdh CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004294 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004353 cdh CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134940 cdh CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001752 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004511 cdh CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061813 cdh CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003634 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000405 cdh CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001837 cdh CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003751 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004644 cdh CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012727 ushB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010216 ushB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003946 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003904 cdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005058 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113033 cdh CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085279 cdh CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102524 cdh CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004289 cdh CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005811 cdh CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074985 cdh CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090213 cdh CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003799 cdh CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004449 cdh CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000148 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011710 cdh CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001183 cdh CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001492 cdh CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000719 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242340 cdh CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008200 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004545 cdh CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007472 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003407 cdh CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128729 cdh CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005880 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007251 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001412 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006097 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007917 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033637 cdh CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006772 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004362 cdh CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004007 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006779 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008094 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003944 cdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004800 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000133 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4202650 to 4213405
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003623cpxACDScomplement42013224202695Upstream
AEC-0003624cpxRCDScomplement42026924203390Upstream
AEC-0004042cpxPCDSforward42035404204040Upstream
AEC-0003625fieFCDSforward42041894205091Upstream
AEC-0003626pfkACDSforward42052724206234Upstream
AEC-0003627sbpCDSforward42065544207543Upstream
AEC-0003628cdhCDSforward42076504208405Matches
AEC-0003629tpiACDScomplement42084604209227Downstream
AEC-0003630yiiQCDScomplement42093354209934Downstream
AEC-0003631yiiRCDSforward42100354210475Downstream
AEC-0003632yiiSCDSforward42106874210986Downstream
AEC-0003633yiiTCDSforward42110134211441Downstream
AEC-0003634fprCDScomplement42114464212192Downstream
AEC-0003635glpXCDScomplement42122894213299Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948