Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003629 (tpiA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003629 showshow history
Names
tpiA ECDH10B_4108
Product
triosephosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4208460 4209227 768 256
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000652 (IPR000652 Triosephosphate isomerase) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004807 triose-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tpiA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012799
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4108 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product triosephosphate isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000652 Triosephosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR000652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012799 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012799
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004807 triose-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000184 tpiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000168 tpiA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020391 tpiA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000111 tpiA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001855 tpiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007546 tpiA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004173 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007071 tpiA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003980 tpiA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010299 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006909 tpiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006613 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081069 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006393 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007635 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004494 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008888 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001158 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008704 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007217 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007408 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006920 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010206 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007880 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008020 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007564 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007646 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007286 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007236 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007089 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029069 tpiA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007783 tpiA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008835 tpiA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012799 tpiA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003435 tpiA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004295 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004354 tpiA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134941 tpiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001753 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004512 tpiA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064609 tpiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002527 tpiA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001173 tpiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000666 tpiA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008491 tpiA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003748 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004661 tpiA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008722 tpiA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012780 tpiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010168 tpiA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007466 tpiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008768 tpiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007805 tpiA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007682 tpiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007378 tpiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007880 tpiA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008759 tpiA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008664 tpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003962 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003921 tpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005076 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008904 tpiA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006674 tpiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008361 tpiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006953 tpiA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113002 tpiA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085261 tpiA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102574 tpiA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005076 tpiA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007812 tpiA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005965 tpiA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004290 tpiA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009816 tpiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005810 tpiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004323 tpiA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074984 tpiA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090214 tpiA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003798 tpiA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004450 tpiA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003406 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000295 tpi CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003188 tpiA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002796 tpiA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003702 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234426 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004199 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004122 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007761 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003205 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115600 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007894 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006236 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005460 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007120 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029638 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005053 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004521 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004586 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004387 tpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004023 tpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000088 tpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000097 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004888 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4203460 to 4214227
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004042cpxPCDSforward42035404204040Downstream
AEC-0003625fieFCDSforward42041894205091Downstream
AEC-0003626pfkACDSforward42052724206234Downstream
AEC-0003627sbpCDSforward42065544207543Downstream
AEC-0003628cdhCDSforward42076504208405Downstream
AEC-0003629tpiACDScomplement42084604209227Matches
AEC-0003630yiiQCDScomplement42093354209934Upstream
AEC-0003631yiiRCDSforward42100354210475Upstream
AEC-0003632yiiSCDSforward42106874210986Upstream
AEC-0003633yiiTCDSforward42110134211441Upstream
AEC-0003634fprCDScomplement42114464212192Upstream
AEC-0003635glpXCDScomplement42122894213299Upstream
AEC-0003636glpKCDScomplement42134344214942Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948