Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003634 (fpr) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003634 showshow history
Names
fpr ECDH10B_4113
Product
ferredoxin-NADP reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4211446 4212192 747 249
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Jul 2009
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Jul 2009
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fpr Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4113 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ferredoxin-NADP reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012818 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000205 fpr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000179 fpr CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020396 fpr CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000114 fpr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001860 fpr CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007541 fpr CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004178 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007066 fpr CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003985 fpr CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010293 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006904 fpr CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006618 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081074 fpr CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006398 fpr CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007630 fpr CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004499 fpr CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008893 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001163 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008709 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007222 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007413 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006915 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010211 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007875 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008025 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007569 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007651 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007281 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007231 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007094 fpr CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029074 fpr CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007788 fpr CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008840 fpr CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012818 fpr CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003430 fpr CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004300 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004359 fpr CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134946 fpr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001758 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004517 fpr CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064606 fpr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002525 fpr CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001171 fpr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000663 fpr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008494 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003745 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004664 fpr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008725 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012791 fpr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010158 fpr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007463 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008771 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007802 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007685 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007381 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007883 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008762 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008667 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003965 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003924 fpr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005080 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008907 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006671 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008364 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006956 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112998 fpr CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085258 fpr CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102583 fpr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005073 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007809 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005968 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004295 fpr CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009823 fpr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005805 fpr CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004316 fpr CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074979 fpr CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090218 fpr CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004248 fpr CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004455 fpr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002368 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000303 fpr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003191 fpr_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002799 fpr CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002675 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234435 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004202 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004118 fpr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007758 fpr CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003202 fpr CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115609 fpr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007891 fpr CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006233 fpr CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002229 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005457 fpr CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007123 fpr CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029635 fpr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005050 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004517 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004582 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004390 fpr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004026 fpr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000091 fpr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000101 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004884 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4206446 to 4217192
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003627sbpCDSforward42065544207543Downstream
AEC-0003628cdhCDSforward42076504208405Downstream
AEC-0003629tpiACDScomplement42084604209227Downstream
AEC-0003630yiiQCDScomplement42093354209934Downstream
AEC-0003631yiiRCDSforward42100354210475Downstream
AEC-0003632yiiSCDSforward42106874210986Downstream
AEC-0003633yiiTCDSforward42110134211441Downstream
AEC-0003634fprCDScomplement42114464212192Matches
AEC-0003635glpXCDScomplement42122894213299Upstream
AEC-0003636glpKCDScomplement42134344214942Upstream
AEC-0003637glpFCDScomplement42149654215810Upstream
AEC-0003638yiiUCDSforward42162354216480Upstream
AEC-0003639rraACDScomplement42165654217050Upstream
AEC-0003640menACDScomplement42171434218069Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948