Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003636 (glpK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003636 showshow history
Names
glpK ECDH10B_4115
Product
glycerol kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4213434 4214942 1509 503
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005999 (IPR005999 Glycerol kinase) Jul 2009
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005999
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004370 glycerol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005999
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012825
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4115 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycerol kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005999 Glycerol kinase Protein Sequence Similarity - InterPro Domain: IPR005999
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012825 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012825
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005999
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004370 glycerol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005999
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001280 glpK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001036 glpK CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020398 glpK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000119 glpK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001862 glpK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007539 glpK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004180 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007064 glpK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003987 glpK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010291 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006902 glpK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006620 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081076 glpK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006400 glpK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007628 glpK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004501 glpK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008895 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001165 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008711 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007224 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007415 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006913 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010213 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007873 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008027 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007571 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007653 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007279 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007229 glpK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007096 glpK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029077 glpK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007790 glpK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008842 glpK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012825 glpK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003428 glpK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004302 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004361 glpK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134948 glpK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001760 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004519 glpK CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064604 glpK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003607 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001170 glpK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000661 glpK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008496 glpK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003743 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004666 glpK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008727 glpK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012797 glpK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010151 glpK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007461 glpK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008773 glpK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007800 glpK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007687 glpK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007383 glpK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007885 glpK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008764 glpK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008669 glpK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003967 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003926 glpK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005082 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008909 glpK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006669 glpK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008366 glpK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006958 glpK CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112993 glpK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085256 glpK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102587 glpK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005071 glpK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007807 glpK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005970 glpK CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004297 glpK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009825 glpK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005803 glpK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004314 glpK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074976 glpK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090220 glpK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004250 glpK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004457 glpK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002365 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000312 glpK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003194 glpK_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002803 glpK_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002672 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234437 glpK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004204 glpK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004116 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007756 glpK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007889 glpK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005992 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002231 pseudogene
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005971 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007125 glpK CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029633 glpK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005048 glpK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004515 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004580 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004392 glpK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004028 glpK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000093 glpK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000103 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004882 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4208434 to 4219942
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003629tpiACDScomplement42084604209227Downstream
AEC-0003630yiiQCDScomplement42093354209934Downstream
AEC-0003631yiiRCDSforward42100354210475Downstream
AEC-0003632yiiSCDSforward42106874210986Downstream
AEC-0003633yiiTCDSforward42110134211441Downstream
AEC-0003634fprCDScomplement42114464212192Downstream
AEC-0003635glpXCDScomplement42122894213299Downstream
AEC-0003636glpKCDScomplement42134344214942Matches
AEC-0003637glpFCDScomplement42149654215810Upstream
AEC-0003638yiiUCDSforward42162354216480Upstream
AEC-0003639rraACDScomplement42165654217050Upstream
AEC-0003640menACDScomplement42171434218069Upstream
AEC-0003641hslUCDScomplement42181364219467Upstream
AEC-0003642hslVCDScomplement42194774220007Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948