Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003637 (glpF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003637 showshow history
Names
glpF ECDH10B_4116
Product
glycerol facilitator
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4214965 4215810 846 282
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012269 (IPR012269 (DEPRECATED) Aquaporin) Jul 2009
Automated Process Approved IPR000425 (IPR000425 Major intrinsic protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012828
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4116 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycerol facilitator Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012269 (DEPRECATED) Aquaporin Protein Sequence Similarity - InterPro Domain: IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000425 Major intrinsic protein Protein Sequence Similarity - InterPro Domain: IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012828 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012828
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000502 glpF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000709 glpF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020399 glpF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000120 glpF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001863 glpF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007538 glpF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004181 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007063 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003988 glpF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010290 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006901 glpF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006621 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081077 glpF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006401 glpF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007627 glpF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004502 glpF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008896 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001166 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008712 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007225 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007416 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006912 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010214 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007872 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008028 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007572 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007654 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007278 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007228 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007097 glpF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029078 glpF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007791 glpF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008843 glpF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012828 glpF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003427 glpF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004303 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004362 glpF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134949 glpF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001761 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004520 glpF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064603 glpF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002523 glpF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001169 glpF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000660 glpF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008497 glpF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003742 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004667 glpF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008728 glpF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012802 glpF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010147 glpF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007460 glpF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008774 glpF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007799 glpF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007688 glpF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007384 glpF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007886 glpF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008765 glpF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008670 glpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003968 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003927 glpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005083 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008910 glpF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006668 glpF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008367 glpF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006959 glpF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112990 glpF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085255 glpF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102590 glpF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005070 glpF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007806 glpF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005971 glpF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004298 glpF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009826 glpF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005802 glpF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004313 glpF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074975 glpF pseudogene
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090221 glpF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004251 glpF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004458 glpF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002364 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000317 glpF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003195 glpF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002804 glpF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002671 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234438 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004205 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004115 glpF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007755 glpF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003200 glpF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115615 glpF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007888 glpF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008819 glpF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002232 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005454 glpF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007126 glpF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029632 glpF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005047 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004514 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004579 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004393 glpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004029 glpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000094 glpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000104 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004881 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4209965 to 4220810
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003631yiiRCDSforward42100354210475Downstream
AEC-0003632yiiSCDSforward42106874210986Downstream
AEC-0003633yiiTCDSforward42110134211441Downstream
AEC-0003634fprCDScomplement42114464212192Downstream
AEC-0003635glpXCDScomplement42122894213299Downstream
AEC-0003636glpKCDScomplement42134344214942Downstream
AEC-0003637glpFCDScomplement42149654215810Matches
AEC-0003638yiiUCDSforward42162354216480Upstream
AEC-0003639rraACDScomplement42165654217050Upstream
AEC-0003640menACDScomplement42171434218069Upstream
AEC-0003641hslUCDScomplement42181364219467Upstream
AEC-0003642hslVCDScomplement42194774220007Upstream
AEC-0003643ftsNCDScomplement42201004221059Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948