Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003655 (gldA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003655 showshow history
Names
gldA ECDH10B_4134
Product
glycerol dehydrogenase, NAD
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4235652 4236755 1104 368
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016160 (IPR016160 Aldehyde dehydrogenase, cysteine active site) Jul 2009
Automated Process Approved IPR016205 (IPR016205 Glycerol dehydrogenase) Jul 2009
Automated Process Approved IPR001670 (IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016160
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016205
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gldA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012912
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4134 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycerol dehydrogenase, NAD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016205 Glycerol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016205
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA Protein Sequence Similarity - InterPro Domain: IPR001670
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016160 Aldehyde dehydrogenase, cysteine active site Protein Sequence Similarity - InterPro Domain: IPR016160
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012912 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012912
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016160
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016205
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002089 gldA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002077 gldA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001885 gldA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007517 gldA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004204 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007043 gldA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004009 gldA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010266 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009133 gldA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009428 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081102 gldA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006424 gldA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007603 gldA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004532 gldA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008919 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001192 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008736 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007249 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007440 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006888 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010238 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007848 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008053 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007598 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007679 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007254 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007204 gldA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007121 gldA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029106 gldA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007816 gldA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008865 gldA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012912 gldA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003409 gldA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004326 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004388 gldA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134972 gldA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001786 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004545 gldA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061082 gldA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000439 gldA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000396 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001794 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008520 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003721 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004695 gldA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008755 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012891 gldA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010060 gldA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007436 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008799 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007774 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007710 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007409 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007911 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008789 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008694 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003991 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003950 gldA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005112 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008934 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006645 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008389 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006981 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112938 gldA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085233 gldA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102664 gldA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005045 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007782 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005995 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004321 gldA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009848 gldA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004272 gldA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004483 gldA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000018 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001635 gldA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003262 gldA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002189 gldA_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003055 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4230652 to 4241755
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003651metFCDSforward42303364231226Downstream
AEC-0003652katGCDSforward42315554233735Downstream
AEC-0003653yijECDSforward42338284234733Downstream
AEC-0003654yijFCDScomplement42347604235377Downstream
AEC-0003655gldACDScomplement42356524236755Matches
AEC-0003656fsaBCDScomplement42367664237428Upstream
AEC-0003657ptsACDScomplement42374404239941Upstream
AEC-0003658frwCCDSforward42402504241329Upstream
AEC-0003659frwBCDSforward42413444241664Upstream
AEC-0003660pflDCDSforward42417154244012Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948