Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003660 (pflD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003660 showshow history
Names
pflD ECDH10B_4139
Product
predicted formate acetyltransferase 2 (pyruvate formate lyase II)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4241715 4244012 2298 766
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010098 (IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family) Jul 2009
Automated Process Approved IPR001150 (IPR001150 Glycine radical domain) Jul 2009
Automated Process Approved IPR004184 (IPR004184 Pyruvate formate lyase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008861 formate C-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pflD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012934
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4139 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted formate acetyltransferase 2 (pyruvate formate lyase II) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family Protein Sequence Similarity - InterPro Domain: IPR010098
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001150 Glycine radical domain Protein Sequence Similarity - InterPro Domain: IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004184 Pyruvate formate lyase domain Protein Sequence Similarity - InterPro Domain: IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012934 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012934
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008861 formate C-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004184
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002858 pflD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002811 pflD CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001890 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007512 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004209 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007038 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004014 pflD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010260 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009128 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009433 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081108 pflD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006429 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007598 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004537 pflD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008924 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001197 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008741 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007254 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007445 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006883 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010243 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007843 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008058 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007603 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007684 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007248 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007198 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007126 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029113 pflD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007821 cutC_3 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008870 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012934 pflD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003404 pflD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004331 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004393 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134979 pflD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001792 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004551 pflD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002485 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008760 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012916 pflD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010040 pflD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007431 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007715 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008794 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008699 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005118 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008939 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006640 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102681 pflD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006000 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004326 pflD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009853 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005773 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004278 pflD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074947 pflD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090241 pflD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004273 pflD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4236715 to 4249012
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003655gldACDScomplement42356524236755Upstream
AEC-0003656fsaBCDScomplement42367664237428Upstream
AEC-0003657ptsACDScomplement42374404239941Upstream
AEC-0003658frwCCDSforward42402504241329Upstream
AEC-0003659frwBCDSforward42413444241664Upstream
AEC-0003660pflDCDSforward42417154244012Matches
AEC-0003661pflCCDSforward42439784244856Overlaps Downstream
AEC-0003662frwDCDSforward42448584245199Downstream
AEC-0003663yijOCDScomplement42451864246037Downstream
AEC-0003664yijPCDScomplement42462524247985Downstream
AEC-0003665ppcCDScomplement42481674250818Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948