Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003661 (pflC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003661 showshow history
Names
pflC ECDH10B_4140
Product
pyruvate formate lyase II activase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4243978 4244856 879 293
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012839 (IPR012839 Organic radical enzyme activase) Jul 2009
Automated Process Approved IPR001989 (IPR001989 Radical-activating enzyme, conserved site) Jul 2009
Automated Process Approved IPR011352 (IPR011352 (DEPRECATED) Pyruvate formate-lyase activating enzyme) Jul 2009
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pflC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012937
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4140 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyruvate formate lyase II activase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012839 Organic radical enzyme activase Protein Sequence Similarity - InterPro Domain: IPR012839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001989 Radical-activating enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011352 (DEPRECATED) Pyruvate formate-lyase activating enzyme Protein Sequence Similarity - InterPro Domain: IPR011352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0012937 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0012937
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006006 glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002861 pflC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002864 pflC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001891 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007511 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004210 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007037 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004015 pflC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010259 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009127 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009434 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081109 pflC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006430 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007597 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004538 pflC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008925 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001198 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008742 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007255 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007446 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006882 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010244 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007842 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008059 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007604 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007685 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007247 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007197 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007127 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029114 pflC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007822 cutD_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008871 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0012937 pflC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003403 pflC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004332 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004394 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134980 pflC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001793 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004552 pflC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064086 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003162 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004701 pflC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008761 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012920 pflC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010037 pflC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007430 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007716 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008795 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008700 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005119 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008940 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006639 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102684 pflC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006001 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004327 pflC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009854 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005772 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004279 pflC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074946 pflC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090242 pflC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004274 pflC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004489 pflC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4238978 to 4249856
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003657ptsACDScomplement42374404239941Upstream
AEC-0003658frwCCDSforward42402504241329Upstream
AEC-0003659frwBCDSforward42413444241664Upstream
AEC-0003660pflDCDSforward42417154244012Overlaps Upstream
AEC-0003661pflCCDSforward42439784244856Matches
AEC-0003662frwDCDSforward42448584245199Downstream
AEC-0003663yijOCDScomplement42451864246037Downstream
AEC-0003664yijPCDScomplement42462524247985Downstream
AEC-0003665ppcCDScomplement42481674250818Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948